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Domain combination pairs in Marinithermus hydrothermalis DSM 14884

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

518 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 122
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 125
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 128
TPR-like TPR-like 97
Actin-like ATPase domain Actin-like ATPase domain 92
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 83
Acyl-CoA dehydrogenase NM domain-like Acyl-CoA dehydrogenase C-terminal domain-like 82
CheY-like C-terminal effector domain of the bipartite response regulators 81
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 74
Ribosomal protein S5 domain 2-like P-loop containing nucleoside triphosphate hydrolases 76
Composite domain of metallo-dependent hydrolases Metallo-dependent hydrolases 63
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 62
MurD-like peptide ligases, catalytic domain MurD-like peptide ligases, peptide-binding domain 63
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 64
FAD/NAD(P)-binding domain FAD/NAD-linked reductases, dimerisation (C-terminal) domain 62
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 63
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 62
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 61
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 66
P-loop containing nucleoside triphosphate hydrolases MOP-like 51
Thiolase-like Thiolase-like 51
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 52
Nucleic acid-binding proteins Nucleic acid-binding proteins 55
GAF domain-like Nucleotide cyclase 55
P-loop containing nucleoside triphosphate hydrolases Translation proteins 53
cAMP-binding domain-like "Winged helix" DNA-binding domain 51
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 53
MetI-like MetI-like 42
HAD-like Calcium ATPase, transmembrane domain M 44
FAD/NAD(P)-binding domain FAD-linked reductases, C-terminal domain 42
Calcium ATPase, transduction domain A HAD-like 44
LuxS/MPP-like metallohydrolase LuxS/MPP-like metallohydrolase 42
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 42
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 41
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 41
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 44
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 42
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 44
Nucleotide cyclase EAL domain-like 44
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 41
Single hybrid motif CoA-dependent acyltransferases 32
GAF domain-like GAF domain-like 33
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 32
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 33
PurM N-terminal domain-like PurM C-terminal domain-like 32
Single hybrid motif Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex 32
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 31
PYP-like sensor domain (PAS domain) Nucleotide cyclase 33
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
GroES-like NAD(P)-binding Rossmann-fold domains 31
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 33
Alpha-L RNA-binding motif Pseudouridine synthase 31
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 33
PreATP-grasp domain Rudiment single hybrid motif 31
GAF domain-like EAL domain-like 33
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 32
Cytochrome c Cytochrome c 32
P-loop containing nucleoside triphosphate hydrolases TPR-like 33
HMA, heavy metal-associated domain HAD-like 33
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 33
ClpP/crotonase ClpP/crotonase 31
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 32
Invasin/intimin cell-adhesion fragments Invasin/intimin cell-adhesion fragments 33
Ribosomal protein S5 domain 2-like EF-G C-terminal domain-like 32
Triger factor/SurA peptide-binding domain-like FKBP-like 33
Class II aaRS and biotin synthetases Class II aaRS ABD-related 33
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 31
lambda repressor-like DNA-binding domains Periplasmic binding protein-like I 31
Trypsin-like serine proteases PDZ domain-like 32
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex CoA-dependent acyltransferases 32
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 32
EF-G C-terminal domain-like EF-G C-terminal domain-like 32
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 31
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 31
PYP-like sensor domain (PAS domain) EAL domain-like 33
Cytochrome c oxidase subunit II-like, transmembrane region Cupredoxins 32
MurE/MurF N-terminal domain MurD-like peptide ligases, catalytic domain 21
Glucocorticoid receptor-like (DNA-binding domain) P-loop containing nucleoside triphosphate hydrolases 22
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 21
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 21
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
MurCD N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 21
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 21
Translation proteins EF-G C-terminal domain-like 21
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 22
Translation proteins Ribosomal protein S5 domain 2-like 21
CBS-domain pair Nucleotidyltransferase 22
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 22
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 22
PUA domain-like Nucleotidylyl transferase 21
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 22
PYP-like sensor domain (PAS domain) GAF domain-like 22
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 21
LysM domain LysM domain 22
P-loop containing nucleoside triphosphate hydrolases FtsH protease domain-like 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Nucleotide-diphospho-sugar transferases Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 21
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
LysM domain Duplicated hybrid motif 22
MurCD N-terminal domain MurD-like peptide ligases, catalytic domain 21
ACT-like ACT-like 22
Penicillin binding protein dimerisation domain beta-lactamase/transpeptidase-like 21
Nucleotidyltransferase Poly A polymerase C-terminal region-like 22
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
PLP-binding barrel Alanine racemase C-terminal domain-like 22
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 22
6-phosphogluconate dehydrogenase C-terminal domain-like 6-phosphogluconate dehydrogenase C-terminal domain-like 22
Formate dehydrogenase/DMSO reductase, domains 1-3 4Fe-4S ferredoxins 22
P-loop containing nucleoside triphosphate hydrolases CBS-domain pair 21
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 22
ThrRS/AlaRS common domain Class II aaRS and biotin synthetases 22
Serine metabolism enzymes domain ACT-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
(Trans)glycosidases Glycosyl hydrolase domain 22
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins ThrRS/AlaRS common domain 22
NAD(P)-binding Rossmann-fold domains ACT-like 22
"Winged helix" DNA-binding domain GAF domain-like 22
tRNA-binding arm Class II aaRS and biotin synthetases 21
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 22
Methylated DNA-protein cysteine methyltransferase domain Methylated DNA-protein cysteine methyltransferase, C-terminal domain 21
Homeodomain-like Ribonuclease H-like 21
"Winged helix" DNA-binding domain GntR ligand-binding domain-like 21
Ribosomal protein S5 domain 2-like Ribonuclease PH domain 2-like 22
EspE N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 22
Chaperone J-domain HSP40/DnaJ peptide-binding domain 22
Folate-binding domain Aminomethyltransferase beta-barrel domain 21
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 22
Clc chloride channel TrkA C-terminal domain-like 21
C-terminal effector domain of the bipartite response regulators TPR-like 22
L30e-like alpha/beta knot 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Sigma2 domain of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 22
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 21
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 21
Thioredoxin-like Thioredoxin-like 21
Nucleic acid-binding proteins RuvA domain 2-like 22
PUA domain-like Ribosomal protein S5 domain 2-like 22
MurE/MurF N-terminal domain MurD-like peptide ligases, peptide-binding domain 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 22
FAD-binding/transporter-associated domain-like FAD-linked oxidases, C-terminal domain 21
Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 21
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 21
PUA domain-like S-adenosyl-L-methionine-dependent methyltransferases 21
DNA clamp DNA clamp 11
PIN domain-like DNA/RNA polymerases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Alpha subunit of glutamate synthase, C-terminal domain 11
PKD domain Quinoprotein alcohol dehydrogenase-like 11
Hsp33 domain HSP33 redox switch-like 11
TPR-like Cytochrome c 11
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
P-loop containing nucleoside triphosphate hydrolases Obg GTP-binding protein C-terminal domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Trigger factor ribosome-binding domain FKBP-like 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Nucleic acid-binding proteins 11
PH0987 N-terminal domain-like Cyclophilin-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
DHH phosphoesterases Poly A polymerase C-terminal region-like 11
Riboflavin synthase domain-like Riboflavin synthase domain-like 11
CRISPR-associated protein CRISPR-associated protein 11
P-loop containing nucleoside triphosphate hydrolases RecA protein, C-terminal domain 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
Class I glutamine amidotransferase-like vWA-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Nitrite and sulphite reductase 4Fe-4S domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
Nucleic acid-binding proteins Putative DNA-binding domain 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
Nucleic acid-binding proteins Anticodon-binding domain of PheRS 11
5' to 3' exonuclease, C-terminal subdomain Ribonuclease H-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
DPP6 N-terminal domain-like alpha/beta-Hydrolases 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 11
Nucleic acid-binding proteins BRCT domain 11
TTHA1013/TTHA0281-like Restriction endonuclease-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
CBS-domain pair Nucleotide cyclase 11
FabD/lysophospholipase-like Probable ACP-binding domain of malonyl-CoA ACP transacylase 11
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
Molybdenum cofactor biosynthesis proteins CinA-like 11
Nqo1 middle domain-like RuvA domain 2-like 11
Cytochrome c oxidase subunit II-like, transmembrane region Cytochrome c 11
EspE N-terminal domain-like EspE N-terminal domain-like 11
Class II aaRS and biotin synthetases Translation proteins 11
Aconitase iron-sulfur domain LeuD/IlvD-like 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
RuvA domain 2-like BRCT domain 11
Trigger factor ribosome-binding domain Triger factor/SurA peptide-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
LysM domain Barwin-like endoglucanases 11
MalF N-terminal region-like MetI-like 11
Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Ribonuclease PH domain 2-like Ribonuclease PH domain 2-like 11
Sigma3 and sigma4 domains of RNA polymerase sigma factors Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
Obg GTP-binding protein N-terminal domain P-loop containing nucleoside triphosphate hydrolases 11
HisI-like all-alpha NTP pyrophosphatases 11
Sporulation related repeat Sporulation related repeat 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
LysM domain Cysteine proteinases 11
R1 subunit of ribonucleotide reductase, N-terminal domain PFL-like glycyl radical enzymes 11
Macro domain-like Zn-dependent exopeptidases 11
CBS-domain pair MgtE membrane domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
DHH phosphoesterases CBS-domain pair 11
Putative DNA-binding domain Resolvase-like 11
alpha-helical ferredoxin ARM repeat 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
THUMP domain-like Adenine nucleotide alpha hydrolases-like 11
PKD domain Subtilisin-like 11
Carbamate kinase-like PUA domain-like 11
Translation proteins Translation proteins 11
P-loop containing nucleoside triphosphate hydrolases Helical scaffold and wing domains of SecA 11
TGS-like Class II aaRS ABD-related 11
Ribonuclease PH domain 2-like Nucleic acid-binding proteins 11
NAD(P)-binding Rossmann-fold domains ClpP/crotonase 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
P-loop containing nucleoside triphosphate hydrolases TRCF domain-like 11
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 11
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 11
Putative DNA-binding domain Putative DNA-binding domain 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PGBD-like 11
Ribonuclease H-like P-loop containing nucleoside triphosphate hydrolases 11
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
Nitrite/Sulfite reductase N-terminal domain-like Nitrite/Sulfite reductase N-terminal domain-like 11
PheT/TilS domain Putative DNA-binding domain 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
CBS-domain pair Poly A polymerase C-terminal region-like 11
Transcription factor NusA, N-terminal domain Nucleic acid-binding proteins 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
L domain-like L domain-like 11
Ribosomal protein S5 domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Class I glutamine amidotransferase-like Adenine nucleotide alpha hydrolases-like 11
TPR-like Lysozyme-like 11
"Winged helix" DNA-binding domain C-terminal domain of arginine repressor 11
Nucleotidylyl transferase An anticodon-binding domain of class I aminoacyl-tRNA synthetases 11
Cytochrome c oxidase subunit I-like Cytochrome c oxidase subunit III-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
DNA ligase/mRNA capping enzyme, catalytic domain BRCT domain 11
GAF domain-like HD-domain/PDEase-like 11
Eukaryotic type KH-domain (KH-domain type I) Nucleic acid-binding proteins 11
HIT-like HIT-like 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 11
Translation initiation factor IF3, N-terminal domain Translation initiation factor IF3, C-terminal domain 11
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 11
ValRS/IleRS/LeuRS editing domain tRNA-binding arm 11
FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
UBA-like Elongation factor Ts (EF-Ts), dimerisation domain 11
Nucleotide-diphospho-sugar transferases HAD-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
TGS-like ThrRS/AlaRS common domain 11
Nucleotidylyl transferase Riboflavin kinase-like 11
Translation proteins PRC-barrel domain 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
Nucleotidylyl transferase tRNA-binding arm 11
Protease propeptides/inhibitors Subtilisin-like 11
UbiD C-terminal domain-like UbiD C-terminal domain-like 11
YjeF N-terminal domain-like Ribokinase-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
P-loop containing nucleoside triphosphate hydrolases TGS-like 11
Ribonuclease PH domain 2-like Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
Cupredoxins Cytochrome c 11
Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 Eukaryotic type KH-domain (KH-domain type I) 11
Protein kinase-like (PK-like) NHL repeat 11
Protein kinase-like (PK-like) Quinoprotein alcohol dehydrogenase-like 11
Fe-S cluster assembly (FSCA) domain-like P-loop containing nucleoside triphosphate hydrolases 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
DNA ligase/mRNA capping enzyme, catalytic domain RuvA domain 2-like 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Nucleic acid-binding proteins 11
Class I glutamine amidotransferase-like LD-carboxypeptidase A C-terminal domain-like 11
MgtE N-terminal domain-like CBS-domain pair 11
TGS-like ACT-like 11
NAD(P)-binding Rossmann-fold domains 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 11
Transmembrane di-heme cytochromes a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
cAMP-binding domain-like CBS-domain pair 11
Nudix "Winged helix" DNA-binding domain 11
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 11
Prokaryotic type I DNA topoisomerase Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
TGS-like Class II aaRS and biotin synthetases 11
Pre-protein crosslinking domain of SecA Helical scaffold and wing domains of SecA 11
Formyltransferase FMT C-terminal domain-like 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
HCP-like TPR-like 11
4Fe-4S ferredoxins ADC-like 11
GAF domain-like C-terminal effector domain of the bipartite response regulators 11
FMN-binding split barrel UbiD C-terminal domain-like 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
PRTase-like PRTase-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
PreATP-grasp domain PreATP-grasp domain 11
Aspartate/glutamate racemase Aspartate/glutamate racemase 11
Ribonuclease PH domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
NagB/RpiA/CoA transferase-like alpha-helical ferredoxin 11
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
"Winged helix" DNA-binding domain Nucleic acid-binding proteins 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
GroEL equatorial domain-like GroEL equatorial domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
Nucleotidyltransferase TGS-like 11
Periplasmic binding protein-like II ACT-like 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
EspE N-terminal domain-like CheY-like 11
PheT/TilS domain Cytidine deaminase-like 11
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
Translation proteins Initiation factor IF2/eIF5b, domain 3 11
Ribosomal protein L7/12, oligomerisation (N-terminal) domain ClpS-like 11
GroEL equatorial domain-like GroEL apical domain-like 11
DHH phosphoesterases Nucleotidyltransferase 11
PDZ domain-like ClpP/crotonase 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
Nucleic acid-binding proteins Prokaryotic type KH domain (KH-domain type II) 11
P-loop containing nucleoside triphosphate hydrolases Pre-protein crosslinking domain of SecA 11
HlyD-like secretion proteins HlyD-like secretion proteins 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
"Winged helix" DNA-binding domain NagB/RpiA/CoA transferase-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) FMN-linked oxidoreductases 11
4Fe-4S ferredoxins 4Fe-4S ferredoxins 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
S13-like H2TH domain Glucocorticoid receptor-like (DNA-binding domain) 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Class II aaRS and biotin synthetases GAD domain-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Thioredoxin-like Six-hairpin glycosidases 11
2Fe-2S ferredoxin-like ADC-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
GAF domain-like Acetyl-CoA synthetase-like 11
Rho N-terminal domain-like Nucleic acid-binding proteins 11
Glutamine synthetase/guanido kinase GatB/YqeY motif 11
Nucleic acid-binding proteins GAD domain-like 11
Transcription factor NusA, N-terminal domain Prokaryotic type KH domain (KH-domain type II) 11
Nucleotidylyl transferase GatB/YqeY motif 11
HD-domain/PDEase-like ACT-like 11
Dihydropteroate synthetase-like Nitrite and sulphite reductase 4Fe-4S domain-like 11
CBS-domain pair Nucleotidyltransferase substrate binding subunit/domain 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Chorismate mutase II Aldolase 11
DNA polymerase beta, N-terminal domain-like PHP domain-like 11
6-phosphogluconate dehydrogenase C-terminal domain-like ClpP/crotonase 11
6-phosphogluconate dehydrogenase C-terminal domain-like ACT-like 11
ThrRS/AlaRS common domain Class II aaRS ABD-related 11
PFL-like glycyl radical enzymes PFL-like glycyl radical enzymes 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
HD-domain/PDEase-like TGS-like 11
CBS-domain pair NTF2-like 11
Families 57/38 glycoside transferase middle domain Galactose mutarotase-like 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Putative DNA-binding domain Anticodon-binding domain of PheRS 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
ADC synthase Class I glutamine amidotransferase-like 11
Ribonuclease H-like DNA/RNA polymerases 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Glycoside hydrolase/deacetylase Galactose mutarotase-like 11
S-adenosyl-L-methionine-dependent methyltransferases DNA methylase specificity domain 11
GreA transcript cleavage protein, N-terminal domain FKBP-like 11
PHP domain-like AF1531-like 11
Cupredoxins Cupredoxins 11
Ribosomal protein L6 Ribosomal protein L6 11
DNA-glycosylase Nudix 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases tRNA-binding arm 11
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 11
Tropomyosin Duplicated hybrid motif 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
MgtE N-terminal domain-like MgtE membrane domain-like 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Cyclophilin-like Cyclophilin-like 11
Obg GTP-binding protein N-terminal domain Obg GTP-binding protein C-terminal domain 11
PEP carboxykinase N-terminal domain PEP carboxykinase-like 11
Ribosomal protein L25-like GatB/YqeY motif 11
CarD-like TRCF domain-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
DeoB insert domain-like Alkaline phosphatase-like 11
Eukaryotic type KH-domain (KH-domain type I) HD-domain/PDEase-like 11
GIY-YIG endonuclease RuvA domain 2-like 11
Alpha-L RNA-binding motif S-adenosyl-L-methionine-dependent methyltransferases 11
C-terminal UvrC-binding domain of UvrB RuvA domain 2-like 11
Glycoside hydrolase/deacetylase Families 57/38 glycoside transferase middle domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Nucleotide cyclase P-loop containing nucleoside triphosphate hydrolases 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
cAMP-binding domain-like Nucleotidyltransferase 11
Class II aaRS and biotin synthetases Anticodon-binding domain of PheRS 11
Oxidoreductase molybdopterin-binding domain E set domains 11
MoeA N-terminal region -like MoeA C-terminal domain-like 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB transmembrane domain 11
Cytidine deaminase-like Dihydrofolate reductase-like 11
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 11
YhbC-like, N-terminal domain YhbC-like, C-terminal domain 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
S-adenosyl-L-methionine-dependent methyltransferases Putative methyltransferase TM0872, insert domain 11
UROD/MetE-like UROD/MetE-like 11
N-utilization substance G protein NusG, N-terminal domain Translation proteins SH3-like domain 11
NTF2-like NTF2-like 11
P-loop containing nucleoside triphosphate hydrolases HCP-like 11
Bacterial fluorinating enzyme, N-terminal domain Bacterial fluorinating enzyme, C-terminal domain 11
Zinc beta-ribbon Sigma3 and sigma4 domains of RNA polymerase sigma factors 11
MesJ substrate recognition domain-like Cytidine deaminase-like 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 11
L9 N-domain-like Ribosomal protein L9 C-domain 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
FAD-binding/transporter-associated domain-like Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 11
NusB-like S-adenosyl-L-methionine-dependent methyltransferases 11
Insert subdomain of RNA polymerase alpha subunit C-terminal domain of RNA polymerase alpha subunit 11
P-loop containing nucleoside triphosphate hydrolases CarD-like 11
Nucleic acid-binding proteins S-adenosyl-L-methionine-dependent methyltransferases 11
Adenine nucleotide alpha hydrolases-like MesJ substrate recognition domain-like 11
5' to 3' exonuclease, C-terminal subdomain DNA/RNA polymerases 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
DNA polymerase beta, N-terminal domain-like Nucleotidyltransferase 11
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Eukaryotic type KH-domain (KH-domain type I) 11
P-loop containing nucleoside triphosphate hydrolases SMR domain-like 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Galactose mutarotase-like Glycosyl hydrolase domain 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains 11
CBS-domain pair FAD-binding/transporter-associated domain-like 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases TrpR-like 11
Nucleotide cyclase TPR-like 11
PheT/TilS domain Class II aaRS and biotin synthetases 11
PIN domain-like Ribonuclease H-like 11
Nucleotidyltransferase PHP domain-like 11
Myosin rod fragments LysM domain 11
Triger factor/SurA peptide-binding domain-like Triger factor/SurA peptide-binding domain-like 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
Nucleotidyltransferase Nucleotidyltransferase substrate binding subunit/domain 11
HD-domain/PDEase-like Nucleotidyltransferase 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
S-adenosylmethionine synthetase S-adenosylmethionine synthetase 11
Nucleotidylyl transferase Alpha-L RNA-binding motif 11
PheT/TilS domain Anticodon-binding domain of PheRS 11
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
Adenine nucleotide alpha hydrolases-like DHS-like NAD/FAD-binding domain 11
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 11
Zinc beta-ribbon DNA primase core 11
N-terminal domain of DnaB helicase P-loop containing nucleoside triphosphate hydrolases 11
Class I glutamine amidotransferase-like GMP synthetase C-terminal dimerisation domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
HD-domain/PDEase-like P-loop containing nucleoside triphosphate hydrolases 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
P-loop containing nucleoside triphosphate hydrolases C-terminal effector domain of the bipartite response regulators 11
Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains Multidrug efflux transporter AcrB transmembrane domain 11
N-terminal domain of MutM-like DNA repair proteins S13-like H2TH domain 11
MoaD/ThiS Molybdopterin synthase subunit MoaE 11
Starch-binding domain-like WD40 repeat-like 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
CBS-domain pair ACT-like 11
Rho N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Prokaryotic type I DNA topoisomerase Zinc beta-ribbon 11
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Adenine nucleotide alpha hydrolases-like PheT/TilS domain 11
Carbamate kinase-like ACT-like 11
Adenine nucleotide alpha hydrolases-like Cytidine deaminase-like 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
Phospholipase D/nuclease Phospholipase D/nuclease 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
MesJ substrate recognition domain-like PheT/TilS domain 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
"Winged helix" DNA-binding domain NAD(P)-binding Rossmann-fold domains 11
GAF domain-like TPR-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
Nucleic acid-binding proteins ArfGap/RecO-like zinc finger 11
RBP11-like subunits of RNA polymerase C-terminal domain of RNA polymerase alpha subunit 11
2Fe-2S ferredoxin-like Formate dehydrogenase/DMSO reductase, domains 1-3 11
Lysozyme-like beta-lactamase/transpeptidase-like 11
Galactose mutarotase-like (Trans)glycosidases 11
YrdC/RibB RibA-like 11
Nucleic acid-binding proteins PheT/TilS domain 11
N-terminal domain of MutM-like DNA repair proteins Glucocorticoid receptor-like (DNA-binding domain) 11
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 11
FMN-linked oxidoreductases Alpha subunit of glutamate synthase, C-terminal domain 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
DNA repair protein MutS, domain III SMR domain-like 11
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 11
cAMP-binding domain-like Nucleotidyltransferase substrate binding subunit/domain 11
Nucleotidyltransferase ACT-like 11
"Winged helix" DNA-binding domain Chorismate lyase-like 11
"Winged helix" DNA-binding domain Acetyl-CoA synthetase-like 11

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