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Domain combination pairs in Methanospirillum hungatei JF-1

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

  • For a list of unique full length architectures for this genome click here (can be slow).
Adjacent domain pairs graph

Graph of adjacent domain pairs.


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Domain combination pairs

492 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N) Superfamily (C) Number of occurrances Number unique
PYP-like sensor domain (PAS domain) PYP-like sensor domain (PAS domain) 7358
PYP-like sensor domain (PAS domain) ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 5340
CheY-like PYP-like sensor domain (PAS domain) 4228
CheY-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 3225
PKD domain PKD domain 2420
PYP-like sensor domain (PAS domain) GAF domain-like 1616
P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases 1510
GAF domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1313
Homodimeric domain of signal transducing histidine kinase ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 1312
TPR-like TPR-like 137
CheY-like GAF domain-like 1111
PYP-like sensor domain (PAS domain) Methyl-accepting chemotaxis protein (MCP) signaling domain 97
P-loop containing nucleoside triphosphate hydrolases "Winged helix" DNA-binding domain 85
PYP-like sensor domain (PAS domain) Homodimeric domain of signal transducing histidine kinase 77
Calcium ATPase, transduction domain A HAD-like 73
HAMP domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 77
Calcium ATPase, transduction domain A Calcium ATPase, transmembrane domain M 73
HAD-like Calcium ATPase, transmembrane domain M 73
Methyl-accepting chemotaxis protein (MCP) signaling domain Methyl-accepting chemotaxis protein (MCP) signaling domain 64
Metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 63
HAMP domain-like PYP-like sensor domain (PAS domain) 66
NAD(P)-binding Rossmann-fold domains 6-phosphogluconate dehydrogenase C-terminal domain-like 62
Nucleotidylyl transferase Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 65
NAD(P)-binding Rossmann-fold domains Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 62
"Winged helix" DNA-binding domain PYP-like sensor domain (PAS domain) 65
PurM N-terminal domain-like PurM C-terminal domain-like 63
MoeA N-terminal region -like Molybdenum cofactor biosynthesis proteins 64
P-loop containing nucleoside triphosphate hydrolases C-terminal domain of alpha and beta subunits of F1 ATP synthase 53
ABC transporter transmembrane region P-loop containing nucleoside triphosphate hydrolases 51
Calcium ATPase, transduction domain A Metal cation-transporting ATPase, ATP-binding domain N 51
P-loop containing nucleoside triphosphate hydrolases Restriction endonuclease-like 55
Formate dehydrogenase/DMSO reductase, domains 1-3 ADC-like 51
Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) 53
Metal cation-transporting ATPase, ATP-binding domain N HAD-like 51
Metal cation-transporting ATPase, ATP-binding domain N Calcium ATPase, transmembrane domain M 51
Class II aaRS and biotin synthetases Class II aaRS ABD-related 44
CBS-domain pair CBS-domain pair 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase P-loop containing nucleoside triphosphate hydrolases 42
Thiamin diphosphate-binding fold (THDP-binding) TK C-terminal domain-like 42
Actin-like ATPase domain Actin-like ATPase domain 44
Cysteine proteinases PKD domain 44
Composite domain of metallo-dependent hydrolases Composite domain of metallo-dependent hydrolases 41
N-terminal domain of alpha and beta subunits of F1 ATP synthase C-terminal domain of alpha and beta subunits of F1 ATP synthase 42
Sensory domain-like HAMP domain-like 44
Sensory domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 43
P-loop containing nucleoside triphosphate hydrolases Translation proteins 43
Molybdenum cofactor biosynthesis proteins MoeA C-terminal domain-like 43
Phospholipase D/nuclease Phospholipase D/nuclease 42
NAD(P)-binding Rossmann-fold domains TrkA C-terminal domain-like 43
P-loop containing nucleoside triphosphate hydrolases Class I glutamine amidotransferase-like 41
"Winged helix" DNA-binding domain S-adenosyl-L-methionine-dependent methyltransferases 42
MoeA N-terminal region -like MoeA C-terminal domain-like 43
Subtilisin-like PKD domain 44
NAD(P)-binding Rossmann-fold domains UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
P-loop containing nucleoside triphosphate hydrolases Ribosomal protein S5 domain 2-like 33
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Ribosomal protein S5 domain 2-like 33
ValRS/IleRS/LeuRS editing domain Nucleotidylyl transferase 32
6-phosphogluconate dehydrogenase C-terminal domain-like UDP-glucose/GDP-mannose dehydrogenase C-terminal domain 31
Enolase N-terminal domain-like Enolase C-terminal domain-like 31
NAD(P)-linked oxidoreductase alpha-helical ferredoxin 31
P-loop containing nucleoside triphosphate hydrolases MOP-like 31
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheW-like 33
ValRS/IleRS/LeuRS editing domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 32
Histidine-containing phosphotransfer domain, HPT domain CheW-like 33
Aminoacid dehydrogenase-like, N-terminal domain NAD(P)-binding Rossmann-fold domains 32
GroEL equatorial domain-like GroEL apical domain-like 31
Nicotinate/Quinolinate PRTase N-terminal domain-like Nicotinate/Quinolinate PRTase C-terminal domain-like 31
Multidrug resistance efflux transporter EmrE Multidrug resistance efflux transporter EmrE 33
Nucleic acid-binding proteins Nucleic acid-binding proteins 33
HAMP domain-like Methyl-accepting chemotaxis protein (MCP) signaling domain 32
ACT-like ACT-like 32
NAD(P)-binding Rossmann-fold domains Succinyl-CoA synthetase domains 32
TPR-like Protein prenylyltransferase 33
Nucleotide-diphospho-sugar transferases Trimeric LpxA-like enzymes 31
Histidine-containing phosphotransfer domain, HPT domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 33
Glutathione synthetase ATP-binding domain-like Succinyl-CoA synthetase domains 32
CheY-like Homodimeric domain of signal transducing histidine kinase 33
4Fe-4S ferredoxins P-loop containing nucleoside triphosphate hydrolases 32
GroEL equatorial domain-like GroEL-intermediate domain like 31
PreATP-grasp domain Glutathione synthetase ATP-binding domain-like 33
GroEL-intermediate domain like GroEL apical domain-like 31
Ribosomal protein S5 domain 2-like GHMP Kinase, C-terminal domain 22
ADC-like Cdc48 domain 2-like 21
DPP6 N-terminal domain-like alpha/beta-Hydrolases 22
Starch-binding domain-like Subtilisin-like 22
Formate/glycerate dehydrogenase catalytic domain-like NAD(P)-binding Rossmann-fold domains 22
Domain of the SRP/SRP receptor G-proteins P-loop containing nucleoside triphosphate hydrolases 22
Translation proteins EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Periplasmic binding protein-like II PYP-like sensor domain (PAS domain) 22
P-loop containing nucleoside triphosphate hydrolases TGS-like 21
ADC-like P-loop containing nucleoside triphosphate hydrolases 21
Histidine-containing phosphotransfer domain, HPT domain CheY-like 22
PPK N-terminal domain-like PHP14-like 21
Cdc48 domain 2-like P-loop containing nucleoside triphosphate hydrolases 21
PPK N-terminal domain-like Phospholipase D/nuclease 21
Cysteine proteinases Starch-binding domain-like 22
Translation proteins SH3-like domain Nucleic acid-binding proteins 22
Starch-binding domain-like PKD domain 22
Tubulin nucleotide-binding domain-like Tubulin C-terminal domain-like 21
"Winged helix" DNA-binding domain Iron-dependent repressor protein, dimerization domain 22
Periplasmic binding protein-like II GlnB-like 21
P-loop containing nucleoside triphosphate hydrolases EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 21
Aldolase 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 21
CBS-domain pair FAD-binding/transporter-associated domain-like 21
Translational machinery components L30e-like 22
4Fe-4S ferredoxins 4Fe-4S ferredoxins 22
Pectin lyase-like PKD domain 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, first 3 domains 21
Subtilisin-like Pectin lyase-like 22
Actin-like ATPase domain Heat shock protein 70kD (HSP70), peptide-binding domain 22
4Fe-4S ferredoxins FMN-dependent nitroreductase-like 21
NAD(P)-binding Rossmann-fold domains LDH C-terminal domain-like 21
Thiamin diphosphate-binding fold (THDP-binding) DHS-like NAD/FAD-binding domain 22
Glutathione synthetase ATP-binding domain-like Phosphoenolpyruvate/pyruvate domain 22
Multidrug efflux transporter AcrB transmembrane domain Multidrug efflux transporter AcrB transmembrane domain 21
TPR-like PKD domain 22
PHP14-like Phospholipase D/nuclease 21
Radical SAM enzymes "Helical backbone" metal receptor 21
Glutathione synthetase ATP-binding domain-like Phosphohistidine domain 22
HAMP domain-like PP2C-like 22
PreATP-grasp domain Rudiment single hybrid motif 22
Coiled-coil domain of nucleotide exchange factor GrpE Head domain of nucleotide exchange factor GrpE 22
Metallo-hydrolase/oxidoreductase Flavoproteins 21
CheW-like CheY-like 22
Cysteine proteinases Subtilisin-like 22
Prokaryotic type KH domain (KH-domain type II) Prokaryotic type KH domain (KH-domain type II) 21
CorA soluble domain-like Magnesium transport protein CorA, transmembrane region 21
Phosphohistidine domain Phosphoenolpyruvate/pyruvate domain 22
Glutathione synthetase ATP-binding domain-like NAD(P)-binding Rossmann-fold domains 21
Nitrite/Sulfite reductase N-terminal domain-like Nitrite and sulphite reductase 4Fe-4S domain-like 22
Phosphoglucomutase, first 3 domains Phosphoglucomutase, C-terminal domain 21
P-loop containing nucleoside triphosphate hydrolases post-AAA+ oligomerization domain-like 21
THUMP domain-like Adenine nucleotide alpha hydrolases-like 21
Sensory domain-like ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 22
CheY-like Methylesterase CheB, C-terminal domain 21
Adenine nucleotide alpha hydrolases-like Adenine nucleotide alpha hydrolases-like 21
Riboflavin synthase domain-like Ferredoxin reductase-like, C-terminal NADP-linked domain 22
Carbohydrate-binding domain PKD domain 21
Ferritin-like Rubredoxin-like 21
HAMP domain-like Homodimeric domain of signal transducing histidine kinase 22
P-loop containing nucleoside triphosphate hydrolases vWA-like 21
Succinyl-CoA synthetase domains Succinyl-CoA synthetase domains 21
Nucleic acid-binding proteins Class II aaRS and biotin synthetases 21
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 22
Glutathione synthetase ATP-binding domain-like Rudiment single hybrid motif 22
Thiolase-like Thiolase-like 21
TPR-like Protein kinase-like (PK-like) 22
Ribonuclease H-like DNA/RNA polymerases 22
"Winged helix" DNA-binding domain "Winged helix" DNA-binding domain 21
Methyl-coenzyme M reductase subunits Methyl-coenzyme M reductase alpha and beta chain C-terminal domain 21
"Winged helix" DNA-binding domain SMAD/FHA domain 21
TATA-box binding protein-like TATA-box binding protein-like 21
Glutamine synthetase/guanido kinase GatB/YqeY motif 22
Creatinase/aminopeptidase "Winged helix" DNA-binding domain 11
Iron-dependent repressor protein, dimerization domain C-terminal domain of transcriptional repressors 11
PIN domain-like 5' to 3' exonuclease, C-terminal subdomain 11
MoeA N-terminal region -like Periplasmic binding protein-like II 11
PRTase-like Nucleotidyltransferase substrate binding subunit/domain 11
Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, C-terminal domain 11
Ribosomal protein S5 domain 2-like Ribulose-phoshate binding barrel 11
Prokaryotic type I DNA topoisomerase Rad51 N-terminal domain-like 11
CheW-like CheC-like 11
Chemotaxis receptor methyltransferase CheR, N-terminal domain S-adenosyl-L-methionine-dependent methyltransferases 11
CBS-domain pair Inosine monophosphate dehydrogenase (IMPDH) 11
P-loop containing nucleoside triphosphate hydrolases HRDC-like 11
Putative DNA-binding domain Putative DNA-binding domain 11
FwdE-like FwdE-like 11
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
CRISPR-associated protein CRISPR-associated protein 11
Formylmethanofuran:tetrahydromethanopterin formyltransferase Formylmethanofuran:tetrahydromethanopterin formyltransferase 11
tRNA-guanine transglycosylase PUA domain-like 11
Nqo1 middle domain-like Nqo1C-terminal domain-like 11
Ribosomal protein S5 domain 2-like Type II DNA topoisomerase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) PRTase-like 11
Metallo-dependent phosphatases 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases Prokaryotic type KH domain (KH-domain type II) 11
Restriction endonuclease-like RuvA domain 2-like 11
tRNA-guanine transglycosylase Pre-PUA domain 11
"Winged helix" DNA-binding domain Riboflavin kinase-like 11
Histidine-containing phosphotransfer domain, HPT domain Homodimeric domain of signal transducing histidine kinase 11
PurM N-terminal domain-like PurM N-terminal domain-like 11
Carbamate kinase-like ACT-like 11
Adenine nucleotide alpha hydrolases-like GMP synthetase C-terminal dimerisation domain 11
DNA repair protein MutS, domain I P-loop containing nucleoside triphosphate hydrolases 11
Pectin lyase-like Pectin lyase-like 11
NAD(P)-binding Rossmann-fold domains Siroheme synthase middle domains-like 11
tRNA-guanine transglycosylase Uracil-DNA glycosylase-like 11
tRNA-binding arm Class II aaRS and biotin synthetases 11
Translation proteins EF-G C-terminal domain-like 11
Ribosomal protein L6 Ribosomal protein L6 11
Zinc beta-ribbon Cyclin-like 11
Sm-like ribonucleoproteins Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
PLP-binding barrel Alanine racemase C-terminal domain-like 11
Domain of the SRP/SRP receptor G-proteins Signal peptide-binding domain 11
NAD-binding domain of HMG-CoA reductase Substrate-binding domain of HMG-CoA reductase 11
Double Clp-N motif P-loop containing nucleoside triphosphate hydrolases 11
Aldolase Single hybrid motif 11
Prismane protein-like alpha-helical ferredoxin 11
RuvA domain 2-like DNA helicase RuvA subunit, C-terminal domain 11
Thioredoxin-like Nqo1 middle domain-like 11
Quinoprotein alcohol dehydrogenase-like Type I dockerin domain 11
"Winged helix" DNA-binding domain GAF domain-like 11
Acylphosphatase/BLUF domain-like Actin-like ATPase domain 11
TrkA C-terminal domain-like TrkA C-terminal domain-like 11
tRNA-intron endonuclease catalytic domain-like tRNA-intron endonuclease catalytic domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase Type II DNA topoisomerase 11
alpha/beta-Hydrolases CBS-domain pair 11
HprK N-terminal domain-like CBS-domain pair 11
PUA domain-like Adenine nucleotide alpha hydrolases-like 11
EF-G C-terminal domain-like Ribosomal protein S5 domain 2-like 11
NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains 11
alpha-helical ferredoxin Nucleotide-binding domain 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 L30e-like 11
Uracil-DNA glycosylase-like PUA domain-like 11
Putative DNA-binding domain Class II aaRS and biotin synthetases 11
Metallo-hydrolase/oxidoreductase Rhodanese/Cell cycle control phosphatase 11
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases Nucleic acid-binding proteins 11
Creatinase/prolidase N-terminal domain Creatinase/aminopeptidase 11
Nucleotidylyl transferase Nucleic acid-binding proteins 11
Prokaryotic type KH domain (KH-domain type II) Metallo-hydrolase/oxidoreductase 11
Homeodomain-like Tetracyclin repressor-like, C-terminal domain 11
Chaperone J-domain TPR-like 11
Glutathione synthetase ATP-binding domain-like Glutathione synthetase ATP-binding domain-like 11
Pseudouridine synthase PUA domain-like 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Nucleic acid-binding proteins 11
MetI-like MetI-like 11
Actin-like ATPase domain Protein kinase-like (PK-like) 11
Initiation factor IF2/eIF5b, domain 3 Translation proteins 11
vWA-like vWA-like 11
PurM C-terminal domain-like PurM C-terminal domain-like 11
ACT-like CheY-like 11
ARM repeat ARM repeat 11
Nqo5-like HydB/Nqo4-like 11
PYP-like sensor domain (PAS domain) CheW-like 11
Ferritin-like Calcium ATPase, transmembrane domain M 11
TPR-like CheC-like 11
RuBisCO, large subunit, small (N-terminal) domain RuBisCo, C-terminal domain 11
Class II aaRS and biotin synthetases Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 11
Diaminopimelate epimerase-like Diaminopimelate epimerase-like 11
CheY-binding domain of CheA CheW-like 11
Voltage-gated potassium channels TrkA C-terminal domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) ThrRS/AlaRS common domain 11
RmlC-like cupins Acyl-CoA N-acyltransferases (Nat) 11
E set domains Metalloproteases ("zincins"), catalytic domain 11
Acylphosphatase/BLUF domain-like YrdC/RibB 11
Aldolase AFP III-like domain 11
"Winged helix" DNA-binding domain HRDC-like 11
PKD domain Hypothetical protein PA1324 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Nucleotidylyl transferase 11
GAD domain-like GatB/YqeY motif 11
P-loop containing nucleoside triphosphate hydrolases Initiation factor IF2/eIF5b, domain 3 11
Prokaryotic type KH domain (KH-domain type II) Ribosomal protein S3 C-terminal domain 11
E set domains E set domains 11
Zn-dependent exopeptidases Bacterial exopeptidase dimerisation domain 11
Thioredoxin-like Nqo1C-terminal domain-like 11
Nucleic acid-binding proteins eIF-2-alpha, C-terminal domain 11
FMN-binding split barrel UbiD C-terminal domain-like 11
NagB/RpiA/CoA transferase-like NagB/RpiA/CoA transferase-like 11
Histidine-containing phosphotransfer domain, HPT domain CheC-like 11
Formate/glycerate dehydrogenase catalytic domain-like ACT-like 11
Adenine nucleotide alpha hydrolases-like PLP-dependent transferases 11
Cation efflux protein transmembrane domain-like Cation efflux protein cytoplasmic domain-like 11
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) Translation proteins 11
Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
HMA, heavy metal-associated domain Calcium ATPase, transduction domain A 11
Aldehyde ferredoxin oxidoreductase, N-terminal domain Aldehyde ferredoxin oxidoreductase, C-terminal domains 11
EspE N-terminal domain-like Nucleotide-diphospho-sugar transferases 11
PreATP-grasp domain Carbamoyl phosphate synthetase, large subunit connection domain 11
HAD-like Ferritin-like 11
Rad51 N-terminal domain-like P-loop containing nucleoside triphosphate hydrolases 11
Nucleic acid-binding proteins P-loop containing nucleoside triphosphate hydrolases 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Sm-like ribonucleoproteins 11
Chaperone J-domain HSP40/DnaJ peptide-binding domain 11
P-loop containing nucleoside triphosphate hydrolases "Helical backbone" metal receptor 11
"Winged helix" DNA-binding domain Dimeric alpha+beta barrel 11
IlvD/EDD N-terminal domain-like LeuD/IlvD-like 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) Nucleotidyltransferase substrate binding subunit/domain 11
CheY-like Methyl-accepting chemotaxis protein (MCP) signaling domain 11
CheY-binding domain of CheA CheY-binding domain of CheA 11
YjeF N-terminal domain-like Ribokinase-like 11
PK beta-barrel domain-like Phosphoenolpyruvate/pyruvate domain 11
Cryptochrome/photolyase, N-terminal domain Cryptochrome/photolyase FAD-binding domain 11
Periplasmic binding protein-like II ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Glutamyl tRNA-reductase catalytic, N-terminal domain NAD(P)-binding Rossmann-fold domains 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease catalytic domain-like 11
Actin-like ATPase domain HD-domain/PDEase-like 11
DPP6 N-terminal domain-like PKD domain 11
Zinc-binding domain of translation initiation factor 2 beta Nucleic acid-binding proteins 11
Aldolase post-HMGL domain-like 11
Apolipoprotein TrkA C-terminal domain-like 11
TPR-like YojJ-like 11
Cysteine proteinases Pectin lyase-like 11
Ribosomal protein S5 domain 2-like DNA mismatch repair protein MutL 11
Ribbon-helix-helix ACT-like 11
Rad51 N-terminal domain-like Rad51 N-terminal domain-like 11
Subtilisin-like Type I dockerin domain 11
4Fe-4S ferredoxins FAD/NAD(P)-binding domain 11
Class II aaRS and biotin synthetases Translation proteins 11
Putative DNA-binding domain Probable bacterial effector-binding domain 11
Periplasmic binding protein-like I Periplasmic binding protein-like I 11
"Winged helix" DNA-binding domain Flavoproteins 11
CBS-domain pair DHH phosphoesterases 11
Nucleic acid-binding proteins DNA helicase RuvA subunit, C-terminal domain 11
Carbon-nitrogen hydrolase Pentein 11
NHL repeat PKD domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase S13-like H2TH domain 11
S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases 11
P-loop containing nucleoside triphosphate hydrolases Sec63 N-terminal domain-like 11
Dom34/Pelota N-terminal domain-like Translational machinery components 11
Thioredoxin-like FAD/NAD(P)-binding domain 11
DNA repair protein MutS, domain II DNA repair protein MutS, domain III 11
HprK N-terminal domain-like DHH phosphoesterases 11
TPR-like Metallo-hydrolase/oxidoreductase 11
Type II DNA topoisomerase GyrA/ParC C-terminal domain-like 11
DNA/RNA polymerases Lesion bypass DNA polymerase (Y-family), little finger domain 11
Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain 11
Pectin lyase-like Protein prenylyltransferase 11
N-terminal nucleophile aminohydrolases (Ntn hydrolases) SIS domain 11
dsRNA-binding domain-like Ribosomal protein S5 domain 2-like 11
"Winged helix" DNA-binding domain DNA/RNA polymerases 11
HMA, heavy metal-associated domain HAD-like 11
NAD(P)-binding Rossmann-fold domains Serine metabolism enzymes domain 11
2Fe-2S ferredoxin-like alpha-helical ferredoxin 11
Methylglyoxal synthase-like Cytidine deaminase-like 11
Adenine nucleotide alpha hydrolases-like Argininosuccinate synthetase, C-terminal domain 11
Type I dockerin domain "Helical backbone" metal receptor 11
S-adenosyl-L-methionine-dependent methyltransferases TPR-like 11
Hypothetical protein AF0491, middle domain EF-G C-terminal domain-like 11
Glutathione synthetase ATP-binding domain-like Carbamoyl phosphate synthetase, large subunit connection domain 11
Rubredoxin-like DHS-like NAD/FAD-binding domain 11
Heme-dependent peroxidases Heme-dependent peroxidases 11
Nucleic acid-binding proteins Metallo-dependent phosphatases 11
UDP-Glycosyltransferase/glycogen phosphorylase Acyl-CoA N-acyltransferases (Nat) 11
Thioredoxin-like Nqo1 FMN-binding domain-like 11
Sensory domain-like Homodimeric domain of signal transducing histidine kinase 11
PYP-like sensor domain (PAS domain) SpoIIaa-like 11
FAD/NAD(P)-binding domain HI0933 insert domain-like 11
Nucleotidylyl transferase Ribosomal protein L25-like 11
Radical SAM enzymes Acyl-CoA N-acyltransferases (Nat) 11
CbiG N-terminal domain-like CobE/GbiG C-terminal domain-like 11
Insert subdomain of RNA polymerase alpha subunit RBP11-like subunits of RNA polymerase 11
Mechanosensitive channel protein MscS (YggB), transmembrane region Mechanosensitive channel protein MscS (YggB), C-terminal domain 11
NAD(P)-binding Rossmann-fold domains DHH phosphoesterases 11
Carbamoyl phosphate synthetase, small subunit N-terminal domain Class I glutamine amidotransferase-like 11
Heat shock protein 70kD (HSP70), peptide-binding domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
PUA domain-like P-loop containing nucleoside triphosphate hydrolases 11
Molybdenum cofactor biosynthesis proteins Periplasmic binding protein-like II 11
Ribosomal protein S5 domain 2-like Ribosomal protein S5 domain 2-like 11
"Winged helix" DNA-binding domain C-terminal domain of transcriptional repressors 11
Periplasmic binding protein-like II ACT-like 11
Translation proteins ThrRS/AlaRS common domain 11
DNA repair protein MutS, domain III P-loop containing nucleoside triphosphate hydrolases 11
Aminopeptidase/glucanase lid domain Zn-dependent exopeptidases 11
Sec63 N-terminal domain-like DNA/RNA polymerases 11
Quinoprotein alcohol dehydrogenase-like Quinoprotein alcohol dehydrogenase-like 11
Fe,Mn superoxide dismutase (SOD), N-terminal domain Fe,Mn superoxide dismutase (SOD), C-terminal domain 11
GatD N-terminal domain-like Glutaminase/Asparaginase 11
Serine metabolism enzymes domain ACT-like 11
Nucleotidyltransferase PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
Nqo1 FMN-binding domain-like Nqo1C-terminal domain-like 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase CheC-like 11
Trimeric LpxA-like enzymes Fe-S cluster assembly (FSCA) domain-like 11
Formate/glycerate dehydrogenase catalytic domain-like Serine metabolism enzymes domain 11
FYSH domain EF-G C-terminal domain-like 11
DNA repair protein MutS, domain II P-loop containing nucleoside triphosphate hydrolases 11
CheY-binding domain of CheA ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Actin-like ATPase domain Heat shock protein 70kD (HSP70), C-terminal subdomain 11
Dom34/Pelota N-terminal domain-like L30e-like 11
Homo-oligomeric flavin-containing Cys decarboxylases, HFCD CoaB-like 11
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain Pyrimidine nucleoside phosphorylase C-terminal domain 11
P-loop containing nucleoside triphosphate hydrolases RuvA domain 2-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleic acid-binding proteins 11
Nucleic acid-binding proteins DHH phosphoesterases 11
Class II aaRS ABD-related C-terminal domain of ProRS 11
Radical SAM enzymes "Winged helix" DNA-binding domain 11
Iron-dependent repressor protein, dimerization domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Nucleic acid-binding proteins eIF2alpha middle domain-like 11
CBS-domain pair ParB/Sulfiredoxin 11
Periplasmic binding protein-like II Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 11
Glutamine synthetase/guanido kinase GAD domain-like 11
Chorismate lyase-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases DNA/RNA polymerases 11
Acyl-CoA N-acyltransferases (Nat) Acyl-CoA N-acyltransferases (Nat) 11
NagB/RpiA/CoA transferase-like D-ribose-5-phosphate isomerase (RpiA), lid domain 11
Chaperone J-domain DnaJ/Hsp40 cysteine-rich domain 11
ATP-dependent DNA ligase DNA-binding domain Nucleic acid-binding proteins 11
Translation proteins Ribosomal protein S5 domain 2-like 11
Rubredoxin-like Superoxide reductase-like 11
Voltage-gated potassium channels NAD(P)-binding Rossmann-fold domains 11
Subtilisin-like Protein prenylyltransferase 11
Nucleotidyltransferase PAP/OAS1 substrate-binding domain 11
HSP40/DnaJ peptide-binding domain HSP40/DnaJ peptide-binding domain 11
DNA ligase/mRNA capping enzyme, catalytic domain Nucleic acid-binding proteins 11
4Fe-4S ferredoxins Nitrite and sulphite reductase 4Fe-4S domain-like 11
Class II aaRS and biotin synthetases C-terminal domain of ProRS 11
P-loop containing nucleoside triphosphate hydrolases Signal peptide-binding domain 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Nucleotidylyl transferase 11
PIN domain-like P-loop containing nucleoside triphosphate hydrolases 11
AF1782-like AF1782-like 11
"Winged helix" DNA-binding domain ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 11
Fic-like "Winged helix" DNA-binding domain 11
MoeA C-terminal domain-like Periplasmic binding protein-like II 11
PUA domain-like Ribosomal protein S5 domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases EF-G C-terminal domain-like 11
GIY-YIG endonuclease C-terminal UvrC-binding domain of UvrB 11
PreATP-grasp domain PreATP-grasp domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III TK C-terminal domain-like 11
"Winged helix" DNA-binding domain CBS-domain pair 11
DnaJ/Hsp40 cysteine-rich domain HSP40/DnaJ peptide-binding domain 11
Pyruvate-ferredoxin oxidoreductase, PFOR, domain III Thiamin diphosphate-binding fold (THDP-binding) 11
PYP-like sensor domain (PAS domain) YojJ-like 11
CheW-like CheW-like 11
P-loop containing nucleoside triphosphate hydrolases Aminoacid dehydrogenase-like, N-terminal domain 11
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase DNA mismatch repair protein MutL 11
Pre-PUA domain PUA domain-like 11
"Winged helix" DNA-binding domain Protein kinase-like (PK-like) 11
Homodimeric domain of signal transducing histidine kinase CheC-like 11
tRNA-intron endonuclease N-terminal domain-like tRNA-intron endonuclease N-terminal domain-like 11
N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 Translational machinery components 11
Nucleic acid-binding proteins RuvA domain 2-like 11
P-loop containing nucleoside triphosphate hydrolases C-terminal UvrC-binding domain of UvrB 11
Ribulose-phoshate binding barrel RraA-like 11
Glutathione synthetase ATP-binding domain-like Methylglyoxal synthase-like 11
RmlC-like cupins Cytidine deaminase-like 11
Methionyl-tRNA synthetase (MetRS), Zn-domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
Carbamoyl phosphate synthetase, large subunit connection domain Methylglyoxal synthase-like 11
EF-G C-terminal domain-like EF-G C-terminal domain-like 11
"Winged helix" DNA-binding domain Class II aaRS and biotin synthetases 11
YrdC/RibB Actin-like ATPase domain 11
Phosphoenolpyruvate/pyruvate domain PK C-terminal domain-like 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain II 11
Translation initiation factor 2 beta, aIF2beta, N-terminal domain Zinc-binding domain of translation initiation factor 2 beta 11
Nucleotide-diphospho-sugar transferases RmlC-like cupins 11
NAD(P)-binding Rossmann-fold domains Glutamyl tRNA-reductase dimerization domain 11
F1F0 ATP synthase subunit C F1F0 ATP synthase subunit C 11
THUMP domain-like S-adenosyl-L-methionine-dependent methyltransferases 11
Radical SAM enzymes SAICAR synthase-like 11
P-loop containing nucleoside triphosphate hydrolases Smc hinge domain 11
Sensory domain-like PP2C-like 11
PreATP-grasp domain Methylglyoxal synthase-like 11
ACT-like Metallo-hydrolase/oxidoreductase 11
Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 11
ATP-dependent DNA ligase DNA-binding domain DNA ligase/mRNA capping enzyme, catalytic domain 11
TATA-box binding protein-like DNA-glycosylase 11
TPR-like Nucleotidyltransferase 11
Sensory domain-like PYP-like sensor domain (PAS domain) 11
Class II aaRS and biotin synthetases C-terminal domain of transcriptional repressors 11
Metallo-hydrolase/oxidoreductase SCP-like 11
Glutamine synthetase, N-terminal domain Glutamine synthetase/guanido kinase 11
Calcium-dependent phosphotriesterase PKD domain 11
"Winged helix" DNA-binding domain Restriction endonuclease-like 11
FYSH domain Hypothetical protein AF0491, middle domain 11
Histidine-containing phosphotransfer domain, HPT domain CheY-binding domain of CheA 11
Tryptophan synthase beta subunit-like PLP-dependent enzymes ACT-like 11
PIN domain-like Prokaryotic type KH domain (KH-domain type II) 11
PAP/OAS1 substrate-binding domain PAP/Archaeal CCA-adding enzyme, C-terminal domain 11
CheY-binding domain of CheA Homodimeric domain of signal transducing histidine kinase 11
Eukaryotic type KH-domain (KH-domain type I) Eukaryotic type KH-domain (KH-domain type I) 11
Nitrite/Sulfite reductase N-terminal domain-like 4Fe-4S ferredoxins 11
post-HMGL domain-like Single hybrid motif 11
Homodimeric domain of signal transducing histidine kinase CheW-like 11
CheY-binding domain of CheA CheC-like 11
HMA, heavy metal-associated domain Ferritin-like 11
Calcium ATPase, transduction domain A Ferritin-like 11
Nqo1 FMN-binding domain-like Nqo1 middle domain-like 11
eIF2alpha middle domain-like eIF-2-alpha, C-terminal domain 11
Rubredoxin-like Thiamin diphosphate-binding fold (THDP-binding) 11
"Winged helix" DNA-binding domain Ligand-binding domain in the NO signalling and Golgi transport 11
"Winged helix" DNA-binding domain Sec63 N-terminal domain-like 11
HMA, heavy metal-associated domain HMA, heavy metal-associated domain 11
Class II aaRS and biotin synthetases ThrRS/AlaRS common domain 11
Thioredoxin-like Six-hairpin glycosidases 11
Glutamyl tRNA-reductase catalytic, N-terminal domain Glutamyl tRNA-reductase dimerization domain 11
2Fe-2S ferredoxin-like 4Fe-4S ferredoxins 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 11
DNA repair protein MutS, domain I DNA repair protein MutS, domain III 11
P-loop containing nucleoside triphosphate hydrolases NAD(P)-binding Rossmann-fold domains 11
N-terminal, heterodimerisation domain of RBP7 (RpoE) Nucleic acid-binding proteins 11
FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 11
GAF domain-like Homodimeric domain of signal transducing histidine kinase 11
PK beta-barrel domain-like PK C-terminal domain-like 11
Cyclin-like Cyclin-like 11
Ferredoxin thioredoxin reductase (FTR), catalytic beta chain Rubredoxin-like 11
Rhodanese/Cell cycle control phosphatase Rhodanese/Cell cycle control phosphatase 11
MFS general substrate transporter MFS general substrate transporter 11
NAD(P)-binding Rossmann-fold domains ACT-like 11
4Fe-4S ferredoxins FMN-linked oxidoreductases 11
S13-like H2TH domain Ribosomal protein S5 domain 2-like 11
Tricorn protease N-terminal domain PKD domain 11
Chorismate lyase-like GHMP Kinase, C-terminal domain 11
HMA, heavy metal-associated domain Calcium ATPase, transmembrane domain M 11
TPR-like HCP-like 11

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