Domain combination pairs in Mycoplasma pneumoniae M129

All pairs of domain combinations at the superfamily level are listed here.
The identification of domain pairs does not account for the possibility of non-contiguous domains. Inserted, or interlaced, domains are seen as having a simple pair ordering.

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Domain combination pairs

176 domain combination pairs.
Click on a column heading to sort that column, or the 'View' button to see domain architetures for that domain pair combination.

Superfamily (N)	Superfamily (C)	Number of occurrances	Number unique
DNA methylase specificity domain	DNA methylase specificity domain	8	2
P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	8	6
Nucleotidylyl transferase	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	6	5
MPN010-like	MPN010-like	5	3
Nucleic acid-binding proteins	Class II aaRS and biotin synthetases	4	3
Class II aaRS and biotin synthetases	Class II aaRS ABD-related	4	3
P-loop containing nucleoside triphosphate hydrolases	Translation proteins	4	4
Actin-like ATPase domain	Actin-like ATPase domain	3	2
ABC transporter transmembrane region	P-loop containing nucleoside triphosphate hydrolases	3	2
ValRS/IleRS/LeuRS editing domain	Nucleotidylyl transferase	3	3
ValRS/IleRS/LeuRS editing domain	Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	3	3
Thiamin diphosphate-binding fold (THDP-binding)	TK C-terminal domain-like	2	2
FAD/NAD(P)-binding domain	FAD/NAD-linked reductases, dimerisation (C-terminal) domain	2	1
P-loop containing nucleoside triphosphate hydrolases	MOP-like	2	1
Domain of the SRP/SRP receptor G-proteins	P-loop containing nucleoside triphosphate hydrolases	2	2
EF-G C-terminal domain-like	EF-G C-terminal domain-like	2	2
N-terminal domain of alpha and beta subunits of F1 ATP synthase	P-loop containing nucleoside triphosphate hydrolases	2	1
Ribosomal protein S5 domain 2-like	Type II DNA topoisomerase	2	1
P-loop containing nucleoside triphosphate hydrolases	Ribosomal protein S5 domain 2-like	2	2
P-loop containing nucleoside triphosphate hydrolases	C-terminal domain of alpha and beta subunits of F1 ATP synthase	2	1
Translation proteins	EF-G C-terminal domain-like	2	2
Nucleic acid-binding proteins	Nucleic acid-binding proteins	2	2
P-loop containing nucleoside triphosphate hydrolases	EF-G C-terminal domain-like	2	2
ThrRS/AlaRS common domain	Class II aaRS and biotin synthetases	2	2
DNA methylase specificity domain	MgtE N-terminal domain-like	2	1
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Ribosomal protein S5 domain 2-like	2	1
MetI-like	MetI-like	2	2
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase	Type II DNA topoisomerase	2	1
Type II DNA topoisomerase	GyrA/ParC C-terminal domain-like	2	1
N-terminal domain of alpha and beta subunits of F1 ATP synthase	C-terminal domain of alpha and beta subunits of F1 ATP synthase	2	1
Nucleic acid-binding proteins	Translation proteins SH3-like domain	2	2
R1 subunit of ribonucleotide reductase, N-terminal domain	PFL-like glycyl radical enzymes	1	1
Translation proteins	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Initiation factor IF2/eIF5b, domain 3	1	1
DNA clamp	DNA clamp	1	1
PUA domain-like	P-loop containing nucleoside triphosphate hydrolases	1	1
L30e-like	alpha/beta knot	1	1
UBA-like	Elongation factor Ts (EF-Ts), dimerisation domain	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	Nucleic acid-binding proteins	1	1
Nucleotidylyl transferase	Alpha-L RNA-binding motif	1	1
Folate-binding domain	TrmE connector domain	1	1
Calcium ATPase, transduction domain A	Calcium ATPase, transmembrane domain M	1	1
Transcription factor NusA, N-terminal domain	Prokaryotic type KH domain (KH-domain type II)	1	1
N-terminal domain of MutM-like DNA repair proteins	S13-like H2TH domain	1	1
NAD(P)-binding Rossmann-fold domains	Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain	1	1
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	1	1
Alpha-L RNA-binding motif	Pseudouridine synthase	1	1
Folate-binding domain	P-loop containing nucleoside triphosphate hydrolases	1	1
GroES-like	NAD(P)-binding Rossmann-fold domains	1	1
NAD(P)-binding Rossmann-fold domains	TrkA C-terminal domain-like	1	1
Nucleic acid-binding proteins	Prokaryotic type KH domain (KH-domain type II)	1	1
FAD/NAD(P)-binding domain	FAD-linked reductases, C-terminal domain	1	1
PK beta-barrel domain-like	Phosphoenolpyruvate/pyruvate domain	1	1
Ribosomal L11/L12e N-terminal domain	Ribosomal protein L11, C-terminal domain	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	BRCT domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Prokaryotic type KH domain (KH-domain type II)	1	1
Nucleic acid-binding proteins	Putative DNA-binding domain	1	1
dsRNA-binding domain-like	Ribosomal protein S5 domain 2-like	1	1
Nucleotide-binding domain	FAD-linked reductases, C-terminal domain	1	1
ValRS/IleRS/LeuRS editing domain	tRNA-binding arm	1	1
Calcium ATPase, transduction domain A	HAD-like	1	1
Class II aaRS and biotin synthetases	Translation proteins	1	1
DNA ligase/mRNA capping enzyme, catalytic domain	RuvA domain 2-like	1	1
Insert subdomain of RNA polymerase alpha subunit	RBP11-like subunits of RNA polymerase	1	1
Sigma2 domain of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	1	1
Phosphoglucomutase, first 3 domains	Phosphoglucomutase, C-terminal domain	1	1
P-loop containing nucleoside triphosphate hydrolases	Pre-protein crosslinking domain of SecA	1	1
Actin-like ATPase domain	Heat shock protein 70kD (HSP70), peptide-binding domain	1	1
NAD(P)-binding Rossmann-fold domains	LDH C-terminal domain-like	1	1
Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain	Pyrimidine nucleoside phosphorylase C-terminal domain	1	1
GroEL-intermediate domain like	GroEL apical domain-like	1	1
Chaperone J-domain	HSP40/DnaJ peptide-binding domain	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphohistidine domain	1	1
Chaperone J-domain	DnaJ/Hsp40 cysteine-rich domain	1	1
S-adenosylmethionine synthetase	S-adenosylmethionine synthetase	1	1
GroEL equatorial domain-like	GroEL-intermediate domain like	1	1
Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain	Pyrimidine nucleoside phosphorylase C-terminal domain	1	1
GreA transcript cleavage protein, N-terminal domain	FKBP-like	1	1
N-terminal domain of MutM-like DNA repair proteins	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Class II aaRS ABD-related	C-terminal domain of ProRS	1	1
S13-like H2TH domain	Glucocorticoid receptor-like (DNA-binding domain)	1	1
Class II aaRS and biotin synthetases	SufE/NifU	1	1
HAD-like	Calcium ATPase, transmembrane domain M	1	1
Aminoacid dehydrogenase-like, N-terminal domain	NAD(P)-binding Rossmann-fold domains	1	1
EF-G C-terminal domain-like	Ribosomal protein S5 domain 2-like	1	1
S-adenosyl-L-methionine-dependent methyltransferases	Putative methyltransferase TM0872, insert domain	1	1
Putative DNA-binding domain	Class II aaRS and biotin synthetases	1	1
Transcription factor NusA, N-terminal domain	Nucleic acid-binding proteins	1	1
Phosphohistidine domain	Phosphoenolpyruvate/pyruvate domain	1	1
Sigma3 and sigma4 domains of RNA polymerase sigma factors	Sigma3 and sigma4 domains of RNA polymerase sigma factors	1	1
HprK N-terminal domain-like	PEP carboxykinase-like	1	1
Trigger factor ribosome-binding domain	FKBP-like	1	1
Elongation factor Ts (EF-Ts), dimerisation domain	Elongation factor Ts (EF-Ts), dimerisation domain	1	1
Translation proteins	Ribosomal protein S5 domain 2-like	1	1
CoA-dependent acyltransferases	CoA-dependent acyltransferases	1	1
Translation proteins	Initiation factor IF2/eIF5b, domain 3	1	1
Class II aaRS and biotin synthetases	GAD domain-like	1	1
Nucleic acid-binding proteins	GAD domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain	1	1
Ribosomal protein L7/12, oligomerisation (N-terminal) domain	ClpS-like	1	1
NAD(P)-binding Rossmann-fold domains	6-phosphogluconate dehydrogenase C-terminal domain-like	1	1
Translation initiation factor IF3, N-terminal domain	Translation initiation factor IF3, C-terminal domain	1	1
PheT/TilS domain	Class II aaRS and biotin synthetases	1	1
Pre-protein crosslinking domain of SecA	Helical scaffold and wing domains of SecA	1	1
P-loop containing nucleoside triphosphate hydrolases	Glucocorticoid receptor-like (DNA-binding domain)	1	1
DnaJ/Hsp40 cysteine-rich domain	HSP40/DnaJ peptide-binding domain	1	1
Glutamine synthetase/guanido kinase	GatB/YqeY motif	1	1
Zinc beta-ribbon	Zinc beta-ribbon	1	1
Zinc beta-ribbon	DNA primase core	1	1
P-loop containing nucleoside triphosphate hydrolases	Smc hinge domain	1	1
RuvA domain 2-like	BRCT domain	1	1
P-loop containing nucleoside triphosphate hydrolases	"Winged helix" DNA-binding domain	1	1
Nucleic acid-binding proteins	RuvA domain 2-like	1	1
Prokaryotic type I DNA topoisomerase	Zinc beta-ribbon	1	1
Prokaryotic type KH domain (KH-domain type II)	Ribosomal protein S3 C-terminal domain	1	1
S-adenosyl-L-methionine-dependent methyltransferases	YrdC/RibB	1	1
"Winged helix" DNA-binding domain	"Winged helix" DNA-binding domain	1	1
P-loop containing nucleoside triphosphate hydrolases	RecA protein, C-terminal domain	1	1
Class II aaRS and biotin synthetases	Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	1	1
P-loop containing nucleoside triphosphate hydrolases	Obg GTP-binding protein C-terminal domain	1	1
Glucose permease domain IIB	Duplicated hybrid motif	1	1
L9 N-domain-like	Ribosomal protein L9 C-domain	1	1
Trigger factor ribosome-binding domain	Triger factor/SurA peptide-binding domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	C-terminal UvrC-binding domain of UvrB	1	1
Nucleotidylyl transferase	tRNA-binding arm	1	1
Phoshotransferase/anion transport protein	PTS system IIB component-like	1	1
Nucleotidylyl transferase	An anticodon-binding domain of class I aminoacyl-tRNA synthetases	1	1
Translation proteins	Translation proteins	1	1
Phosphoglucomutase, first 3 domains	Phosphoglucomutase, first 3 domains	1	1
ThrRS/AlaRS common domain	Class II aaRS ABD-related	1	1
TrmE connector domain	P-loop containing nucleoside triphosphate hydrolases	1	1
Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases	tRNA-binding arm	1	1
Prokaryotic type KH domain (KH-domain type II)	Prokaryotic type KH domain (KH-domain type II)	1	1
THUMP domain-like	Adenine nucleotide alpha hydrolases-like	1	1
Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain	Phosphoenolpyruvate/pyruvate domain	1	1
Thiamin diphosphate-binding fold (THDP-binding)	Thiamin diphosphate-binding fold (THDP-binding)	1	1
Class II aaRS and biotin synthetases	C-terminal domain of ProRS	1	1
Nucleotidylyl transferase	Riboflavin kinase-like	1	1
Insert subdomain of RNA polymerase alpha subunit	C-terminal domain of RNA polymerase alpha subunit	1	1
Nucleic acid-binding proteins	PheT/TilS domain	1	1
Phosphoenolpyruvate/pyruvate domain	PK C-terminal domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	TrpR-like	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	ThrRS/AlaRS common domain	1	1
Creatinase/prolidase N-terminal domain	Creatinase/aminopeptidase	1	1
Enolase N-terminal domain-like	Enolase C-terminal domain-like	1	1
Formyltransferase	FMT C-terminal domain-like	1	1
Translation proteins	ThrRS/AlaRS common domain	1	1
HSP40/DnaJ peptide-binding domain	HSP40/DnaJ peptide-binding domain	1	1
Obg GTP-binding protein N-terminal domain	Obg GTP-binding protein C-terminal domain	1	1
PheT/TilS domain	Putative DNA-binding domain	1	1
Ribosomal protein L6	Ribosomal protein L6	1	1
Domain of the SRP/SRP receptor G-proteins	Signal peptide-binding domain	1	1
tRNA-binding arm	Class II aaRS and biotin synthetases	1	1
Ribonuclease H-like	AF1531-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Helical scaffold and wing domains of SecA	1	1
MPN010-like	Tropomyosin	1	1
Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)	Translation proteins	1	1
PK beta-barrel domain-like	PK C-terminal domain-like	1	1
FKBP-like	Triger factor/SurA peptide-binding domain-like	1	1
P-loop containing nucleoside triphosphate hydrolases	FtsH protease domain-like	1	1
"Winged helix" DNA-binding domain	GAF domain-like	1	1
Nucleic acid-binding proteins	BRCT domain	1	1
HD-domain/PDEase-like	Nucleotidyltransferase	1	1
Nucleotidylyl transferase	HD-domain/PDEase-like	1	1
Coiled-coil domain of nucleotide exchange factor GrpE	Head domain of nucleotide exchange factor GrpE	1	1
DNA/RNA polymerases	Lesion bypass DNA polymerase (Y-family), little finger domain	1	1
Obg GTP-binding protein N-terminal domain	P-loop containing nucleoside triphosphate hydrolases	1	1
PUA domain-like	Ribosomal protein S5 domain 2-like	1	1
P-loop containing nucleoside triphosphate hydrolases	Microbial and mitochondrial ADK, insert "zinc finger" domain	1	1
P-loop containing nucleoside triphosphate hydrolases	TGS-like	1	1
RBP11-like subunits of RNA polymerase	C-terminal domain of RNA polymerase alpha subunit	1	1
PIN domain-like	5' to 3' exonuclease, C-terminal subdomain	1	1
GroEL equatorial domain-like	GroEL apical domain-like	1	1
Single hybrid motif	CoA-dependent acyltransferases	1	1
P-loop containing nucleoside triphosphate hydrolases	Signal peptide-binding domain	1	1
2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain	Alkaline phosphatase-like	1	1

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