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Helicobacter pylori B38 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter; Helicobacter pylori; Helicobacter pylori B38

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1382 total
929 (67 %) with assignment
323 average length
60 % amino acid coverage
Domains: 1354 total
513 unique superfamilies
300 unique families
289 average length
2.6 average superfamily size
62 % formed by duplication
Domain combinations: 262 domain pairs
598 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

110 96 39 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
35 35 6 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
33 33 14 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
23 17 14 2 SCOP 50249 Nucleic acid-binding proteins
16 14 12 6 SCOP 54211 Ribosomal protein S5 domain 2-like
15 15 11 3 SCOP 52374 Nucleotidylyl transferase
14 8 6 2 SCOP 53067 Actin-like ATPase domain
13 13 2 3 SCOP 102114 Radical SAM enzymes
13 9 4 1 SCOP 81901 HCP-like
12 12 5 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
12 12 1 3 SCOP 53383 PLP-dependent transferases
11 11 9 1 SCOP 55681 Class II aaRS and biotin synthetases
11 11 1 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
10 10 4 1 SCOP 53850 Periplasmic binding protein-like II
10 6 6 0 SCOP 48452 TPR-like
10 10 6 0 SCOP 52172 CheY-like
9 9 3 1 SCOP 161098 MetI-like
9 6 4 1 SCOP 46626 Cytochrome c
9 8 7 2 SCOP 50447 Translation proteins
8 8 3 6 SCOP 51569 Aldolase
8 8 4 2 SCOP 56784 HAD-like
8 6 3 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
8 8 3 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
8 5 3 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
8 3 2 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
7 6 5 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
7 7 3 1 SCOP 52833 Thioredoxin-like
7 7 3 1 SCOP 53098 Ribonuclease H-like
7 7 3 0 SCOP 46955 Putative DNA-binding domain
7 4 2 0 SCOP 116734 DNA methylase specificity domain
7 6 6 0 SCOP 55021 ACT-like
7 7 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 2 2 SCOP 53271 PRTase-like
6 6 4 1 SCOP 51905 FAD/NAD(P)-binding domain
6 5 2 3 SCOP 51366 Ribulose-phoshate binding barrel
6 6 4 1 SCOP 55120 Pseudouridine synthase
6 6 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
6 6 2 0 SCOP 103473 MFS general substrate transporter
6 6 4 1 SCOP 55174 Alpha-L RNA-binding motif
6 6 2 1 SCOP 56935 Porins
6 6 3 0 SCOP 56317 Carbon-nitrogen hydrolase
6 6 5 3 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
6 4 4 1 SCOP 56024 Phospholipase D/nuclease
6 4 4 0 SCOP 50156 PDZ domain-like
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 3 2 1 SCOP 54980 EF-G C-terminal domain-like
6 5 4 1 SCOP 52440 PreATP-grasp domain
6 2 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
6 3 2 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
5 5 4 3 SCOP 51556 Metallo-dependent hydrolases
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 4 0 SCOP 46785 "Winged helix" DNA-binding domain
5 5 4 2 SCOP 51161 Trimeric LpxA-like enzymes
5 5 3 0 SCOP 54862 4Fe-4S ferredoxins
5 5 2 3 SCOP 52096 ClpP/crotonase
5 4 3 0 SCOP 117143 Flagellar hook protein flgE
5 5 3 1 SCOP 51419 PLP-binding barrel
5 5 3 1 SCOP 50341 CheW-like
5 3 3 0 SCOP 57783 Zinc beta-ribbon
5 5 1 0 SCOP 143100 TTHA1013/TTHA0281-like
5 5 3 0 SCOP 56954 Outer membrane efflux proteins (OEP)
5 5 1 0 SCOP 54786 YcfA/nrd intein domain
5 5 2 1 SCOP 159594 XCC0632-like
5 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 5 1 0 SCOP 53041 Resolvase-like
5 3 2 2 SCOP 53901 Thiolase-like
5 5 4 1 SCOP 46548 alpha-helical ferredoxin
5 5 1 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
5 5 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 3 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 4 1 SCOP 52317 Class I glutamine amidotransferase-like
4 4 3 1 SCOP 53613 Ribokinase-like
4 4 3 3 SCOP 53697 SIS domain
4 4 2 4 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
4 4 3 1 SCOP 75217 alpha/beta knot
4 4 3 0 SCOP 51261 Duplicated hybrid motif
4 4 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
4 4 3 1 SCOP 64518 Phase 1 flagellin
4 4 4 2 SCOP 53187 Zn-dependent exopeptidases
4 4 4 1 SCOP 109604 HD-domain/PDEase-like
4 3 2 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
4 4 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
4 4 4 0 SCOP 54534 FKBP-like
4 4 3 1 SCOP 53649 Alkaline phosphatase-like
4 4 4 0 SCOP 55008 HMA, heavy metal-associated domain
4 4 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
4 3 3 0 SCOP 111369 HlyD-like secretion proteins
4 3 3 1 SCOP 51338 Composite domain of metallo-dependent hydrolases
4 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
4 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 4 1 0 SCOP 103515 Autotransporter
4 4 4 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 4 2 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
4 4 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
4 4 2 0 SCOP 52922 TK C-terminal domain-like
4 4 2 1 SCOP 50621 Alanine racemase C-terminal domain-like
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 1 1 SCOP 53167 Purine and uridine phosphorylases
3 3 2 1 SCOP 54197 HIT-like
3 3 2 1 SCOP 64182 DHH phosphoesterases
3 3 3 0 SCOP 56300 Metallo-dependent phosphatases
3 3 1 2 SCOP 47240 Ferritin-like
3 3 1 0 SCOP 52980 Restriction endonuclease-like
3 3 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
3 3 1 1 SCOP 48557 L-aspartase-like
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 3 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
3 3 3 0 SCOP 50182 Sm-like ribonucleoproteins
3 2 2 1 SCOP 50475 FMN-binding split barrel
3 3 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 2 0 SCOP 56601 beta-lactamase/transpeptidase-like
3 3 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 3 1 SCOP 81301 Nucleotidyltransferase
3 3 1 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
3 3 3 1 SCOP 53955 Lysozyme-like
3 3 3 0 SCOP 101801 Surface presentation of antigens (SPOA)
3 3 3 0 SCOP 47781 RuvA domain 2-like
3 3 3 0 SCOP 46565 Chaperone J-domain
3 3 1 1 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 1 1 0 SCOP 49265 Fibronectin type III
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 0 SCOP 53474 alpha/beta-Hydrolases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 1 1 SCOP 52218 Flavoproteins
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 47336 ACP-like
2 2 2 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
2 2 2 1 SCOP 50129 GroES-like
2 2 2 1 SCOP 53633 Carbamate kinase-like
2 1 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 2 SCOP 56770 HydA/Nqo6-like
2 2 2 1 SCOP 54292 2Fe-2S ferredoxin-like
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 55811 Nudix
2 2 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 2 1 SCOP 142695 RibA-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 51395 FMN-linked oxidoreductases
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 1 1 SCOP 56634 Heme-dependent catalase-like
2 2 2 0 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 2 0 SCOP 54427 NTF2-like
2 2 2 1 SCOP 56322 ADC synthase
2 2 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 2 0 SCOP 51182 RmlC-like cupins
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 1 SCOP 81342 Transmembrane di-heme cytochromes
2 2 2 1 SCOP 54631 CBS-domain pair
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 2 2 SCOP 52016 LeuD/IlvD-like
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 1 0 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 1 SCOP 50692 ADC-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 2 SCOP 56762 HydB/Nqo4-like
2 2 2 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
2 2 2 0 SCOP 54736 ClpS-like
2 2 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 2 1 0 SCOP 103088 OmpA-like
2 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
2 2 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 1 SCOP 161070 SNF-like
2 2 1 0 SCOP 141457 BH3618-like
2 2 2 1 SCOP 51604 Enolase C-terminal domain-like
2 2 2 0 SCOP 103039 CheC-like
2 2 1 0 SCOP 74653 TolA/TonB C-terminal domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 1 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
2 2 1 1 SCOP 51246 Rudiment single hybrid motif
2 2 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
2 2 2 0 SCOP 81923 Double Clp-N motif
2 2 2 0 SCOP 160544 EscU C-terminal domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 1 1 1 SCOP 48029 FliG
2 2 1 1 SCOP 140990 FtsH protease domain-like
2 2 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
2 1 1 0 SCOP 143968 UbiD C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 1 SCOP 143548 Serine metabolism enzymes domain
2 1 1 0 SCOP 63380 Riboflavin synthase domain-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 1 SCOP 142433 CinA-like
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 117130 CsrA-like
1 1 1 0 SCOP 54060 His-Me finger endonucleases
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 117991 YbeD/HP0495-like
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 50978 WD40 repeat-like
1 1 1 1 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 0 SCOP 55315 L30e-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 1 SCOP 51726 UROD/MetE-like
1 1 1 0 SCOP 50891 Cyclophilin-like
1 1 1 0 SCOP 54001 Cysteine proteinases
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 52972 ITPase-like
1 1 1 0 SCOP 51197 Clavaminate synthase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 69618 HemD-like
1 1 1 0 SCOP 52768 Arginase/deacetylase
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 81442 Cytochrome c oxidase subunit I-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 81648 a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 1 SCOP 51069 Carbonic anhydrase
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 1 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 143011 RelE-like
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 53807 "Helical backbone" metal receptor
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 53300 vWA-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 158682 TerB-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 1 SCOP 53732 Aconitase iron-sulfur domain
1 1 1 1 SCOP 54111 Urease, gamma-subunit
1 1 1 1 SCOP 51278 Urease, beta-subunit
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158442 DsbB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 140931 Fic-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 1 SCOP 101874 YceI-like
1 1 1 0 SCOP 56925 OMPA-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 50939 Sialidases
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 160631 SMI1/KNR4-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 0 SCOP 160975 AF1531-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 52200 Toll/Interleukin receptor TIR domain
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 69304 Tricorn protease N-terminal domain
1 1 1 1 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 48230 Chondroitin AC/alginate lyase
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 54106 LysM domain
1 1 1 0 SCOP 103190 Sensory domain-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 1 SCOP 158752 HP0242-like
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 1 SCOP 158414 HP0062-like
1 1 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
1 1 1 0 SCOP 52964 TolB, N-terminal domain
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 68912 Rho N-terminal domain-like
1 1 1 1 SCOP 56042 PurM C-terminal domain-like
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 110997 Sporulation related repeat
1 1 1 0 SCOP 55326 PurM N-terminal domain-like
1 1 1 0 SCOP 90002 Hypothetical protein YjiA, C-terminal domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 0 SCOP 51984 MurCD N-terminal domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 63882 MoeA N-terminal region -like
1 1 1 1 SCOP 140496 HP1531-like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 69287 Urease metallochaperone UreE, N-terminal domain
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 69737 Urease metallochaperone UreE, C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 143856 DeoB insert domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Head morphogenesis protein gp7
SCOP superfamily SEA domain
SCOP superfamily Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor
SCOP superfamily Clc chloride channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily YhbC-like, C-terminal domain
SCOP superfamily PX domain
SCOP superfamily MoeA C-terminal domain-like
SCOP superfamily MurE/MurF N-terminal domain
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily Tropomyosin
SCOP superfamily Metallothionein
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily Rubredoxin-like
SCOP superfamily Growth factor receptor domain
SCOP superfamily PYP-like sensor domain (PAS domain)
SCOP superfamily Periplasmic binding protein-like I
SCOP superfamily Outer surface protein
SCOP superfamily Spermadhesin, CUB domain
SCOP superfamily HSP20-like chaperones
SCOP superfamily Multiheme cytochromes
SCOP superfamily ARM repeat
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily ERP29 C domain-like
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily Apolipoprotein
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily Spectrin repeat
SCOP superfamily Homeodomain-like
SCOP superfamily Prefoldin
SCOP superfamily CHY zinc finger-like
SCOP superfamily Cation efflux protein transmembrane domain-like
SCOP superfamily SSO1389-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily YdgH-like
SCOP superfamily Cgl1923-like
SCOP superfamily Sec63 N-terminal domain-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily TSP9-like
SCOP superfamily CSL zinc finger
SCOP superfamily NAP-like
SCOP superfamily Nqo1 FMN-binding domain-like
SCOP superfamily Extracellular hemoglobin linker subunit, receptor domain
SCOP superfamily IpaD-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily FlgN-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily MIT domain
SCOP superfamily DNA-binding domain of EIN3-like
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily OmpH-like
SCOP superfamily Mitochondrial carrier
SCOP superfamily NHL repeat
SCOP superfamily YcfC-like

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