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Methanococcus maripaludis C6 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus; Methanococcus maripaludis; Methanococcus maripaludis C6

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1826 total
1186 (65 %) with assignment
278 average length
62 % amino acid coverage
Domains: 1614 total
510 unique superfamilies
316 unique families
265 average length
3.2 average superfamily size
68 % formed by duplication
Domain combinations: 255 domain pairs
645 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

119 111 37 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
45 45 17 1 SCOP 46785 "Winged helix" DNA-binding domain
41 33 15 0 SCOP 54862 4Fe-4S ferredoxins
32 26 15 2 SCOP 50249 Nucleic acid-binding proteins
32 32 7 10 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
31 31 18 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
24 24 3 1 SCOP 102114 Radical SAM enzymes
22 22 6 1 SCOP 53850 Periplasmic binding protein-like II
20 16 7 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
20 17 10 0 SCOP 54631 CBS-domain pair
18 18 8 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
15 14 9 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
15 15 1 5 SCOP 53383 PLP-dependent transferases
15 12 10 0 SCOP 55021 ACT-like
14 14 9 2 SCOP 52374 Nucleotidylyl transferase
14 13 9 3 SCOP 54211 Ribosomal protein S5 domain 2-like
13 12 6 1 SCOP 51905 FAD/NAD(P)-binding domain
12 12 10 2 SCOP 55681 Class II aaRS and biotin synthetases
12 8 4 0 SCOP 48452 TPR-like
11 11 5 3 SCOP 51569 Aldolase
11 11 3 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
11 11 5 1 SCOP 52317 Class I glutamine amidotransferase-like
11 11 2 1 SCOP 161098 MetI-like
11 11 3 5 SCOP 51366 Ribulose-phoshate binding barrel
11 11 3 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
11 10 8 2 SCOP 50447 Translation proteins
9 9 4 3 SCOP 51556 Metallo-dependent hydrolases
9 9 2 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
9 9 6 0 SCOP 47413 lambda repressor-like DNA-binding domains
9 9 2 0 SCOP 56349 DNA breaking-rejoining enzymes
9 9 2 2 SCOP 54913 GlnB-like
9 8 3 1 SCOP 56042 PurM C-terminal domain-like
9 8 3 1 SCOP 55326 PurM N-terminal domain-like
8 7 3 2 SCOP 53271 PRTase-like
8 8 3 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
8 8 3 2 SCOP 51182 RmlC-like cupins
8 8 2 2 SCOP 53807 "Helical backbone" metal receptor
8 8 6 1 SCOP 88697 PUA domain-like
7 7 4 2 SCOP 56784 HAD-like
7 7 5 1 SCOP 53067 Actin-like ATPase domain
7 7 2 1 SCOP 47240 Ferritin-like
7 7 2 0 SCOP 47598 Ribbon-helix-helix
7 4 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
7 7 5 0 SCOP 46548 alpha-helical ferredoxin
7 7 4 0 SCOP 52922 TK C-terminal domain-like
6 6 1 1 SCOP 57829 Zn-binding ribosomal proteins
6 6 1 1 SCOP 53790 Tetrapyrrole methylase
6 6 4 3 SCOP 53613 Ribokinase-like
6 6 4 1 SCOP 50104 Translation proteins SH3-like domain
6 6 5 2 SCOP 55120 Pseudouridine synthase
6 6 4 1 SCOP 64182 DHH phosphoesterases
6 6 3 1 SCOP 56300 Metallo-dependent phosphatases
6 6 3 0 SCOP 52218 Flavoproteins
6 6 4 3 SCOP 53098 Ribonuclease H-like
6 6 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 4 4 0 SCOP 48371 ARM repeat
6 6 1 1 SCOP 56801 Acetyl-CoA synthetase-like
6 1 1 0 SCOP 49478 Cna protein B-type domain
6 5 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
6 6 3 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
6 6 3 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 6 5 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 5 3 0 SCOP 103190 Sensory domain-like
6 5 4 2 SCOP 52440 PreATP-grasp domain
6 6 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 3 0 SCOP 56112 Protein kinase-like (PK-like)
5 5 2 1 SCOP 52833 Thioredoxin-like
5 5 1 0 SCOP 51658 Xylose isomerase-like
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 5 2 1 SCOP 51395 FMN-linked oxidoreductases
5 5 2 0 SCOP 50475 FMN-binding split barrel
5 5 4 1 SCOP 88723 PIN domain-like
5 4 2 0 SCOP 51126 Pectin lyase-like
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 4 3 0 SCOP 57783 Zinc beta-ribbon
5 5 3 0 SCOP 81301 Nucleotidyltransferase
5 5 2 0 SCOP 89550 PHP domain-like
5 5 4 0 SCOP 50692 ADC-like
5 5 1 0 SCOP 56762 HydB/Nqo4-like
5 5 1 0 SCOP 53146 Nitrogenase accessory factor-like
5 5 2 0 SCOP 50331 MOP-like
5 5 3 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
4 4 3 1 SCOP 53137 Translational machinery components
4 4 2 3 SCOP 75217 alpha/beta knot
4 4 4 1 SCOP 109755 PhoU-like
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 4 2 2 SCOP 51161 Trimeric LpxA-like enzymes
4 4 1 0 SCOP 56770 HydA/Nqo6-like
4 4 3 0 SCOP 46689 Homeodomain-like
4 4 3 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 2 1 SCOP 109604 HD-domain/PDEase-like
4 4 3 1 SCOP 55315 L30e-like
4 4 1 0 SCOP 51726 UROD/MetE-like
4 4 2 2 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 4 2 SCOP 55931 Glutamine synthetase/guanido kinase
4 4 3 1 SCOP 52172 CheY-like
4 4 3 0 SCOP 51717 Dihydropteroate synthetase-like
4 4 2 1 SCOP 52016 LeuD/IlvD-like
4 4 4 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
4 4 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
4 4 3 2 SCOP 52467 DHS-like NAD/FAD-binding domain
4 4 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 2 1 0 SCOP 53901 Thiolase-like
4 4 3 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
4 4 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 3 3 0 SCOP 54980 EF-G C-terminal domain-like
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 2 2 0 SCOP 117074 Hypothetical protein PA1324
3 3 1 2 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 0 SCOP 103473 MFS general substrate transporter
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 2 0 SCOP 52096 ClpP/crotonase
3 3 2 0 SCOP 75169 DsrEFH-like
3 3 2 0 SCOP 47113 Histone-fold
3 3 1 0 SCOP 53649 Alkaline phosphatase-like
3 3 1 0 SCOP 143011 RelE-like
3 3 1 1 SCOP 111352 Ammonium transporter
3 3 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 3 2 SCOP 56821 Prismane protein-like
3 3 2 0 SCOP 57802 Rubredoxin-like
3 3 1 0 SCOP 53163 HybD-like
3 2 2 0 SCOP 47781 RuvA domain 2-like
3 3 2 0 SCOP 63867 MoeA C-terminal domain-like
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 3 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
3 3 2 1 SCOP 51246 Rudiment single hybrid motif
3 3 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
3 3 3 1 SCOP 52935 PK C-terminal domain-like
3 3 2 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
3 3 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
3 3 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 2 1 SCOP 63882 MoeA N-terminal region -like
3 3 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 0 SCOP 81653 Calcium ATPase, transduction domain A
2 2 1 1 SCOP 53927 Cytidine deaminase-like
2 2 2 2 SCOP 53697 SIS domain
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 2 1 SCOP 52980 Restriction endonuclease-like
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 2 SCOP 53720 ALDH-like
2 2 1 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 2 2 SCOP 55205 EPT/RTPC-like
2 2 2 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 2 1 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 53187 Zn-dependent exopeptidases
2 2 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 1 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 1 SCOP 46579 Prefoldin
2 2 1 0 SCOP 54001 Cysteine proteinases
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 2 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 1 1 1 SCOP 54506 Diaminopimelate epimerase-like
2 2 2 0 SCOP 53639 AraD/HMP-PK domain-like
2 2 1 1 SCOP 52972 ITPase-like
2 2 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 0 SCOP 52091 SpoIIaa-like
2 2 2 2 SCOP 51998 PFL-like glycyl radical enzymes
2 1 1 0 SCOP 46955 Putative DNA-binding domain
2 2 2 1 SCOP 54909 Dimeric alpha+beta barrel
2 2 1 0 SCOP 50494 Trypsin-like serine proteases
2 2 1 0 SCOP 118196 YaeB-like
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 2 1 SCOP 50341 CheW-like
2 2 1 0 SCOP 117782 YbjQ-like
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 1 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 0 SCOP 140931 Fic-like
2 2 1 1 SCOP 144010 CofE-like
2 2 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 0 SCOP 103039 CheC-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 2 1 SCOP 143437 THUMP domain-like
2 2 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 1 1 0 SCOP 55979 DNA clamp
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 143555 FwdE-like
2 2 1 0 SCOP 140371 Vng1086c-like
2 2 2 0 SCOP 158472 HAMP domain-like
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 2 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 1 1 0 SCOP 55945 TATA-box binding protein-like
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 1 SCOP 158702 Sec63 N-terminal domain-like
2 2 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 0 SCOP 81271 TGS-like
2 2 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 88802 Pre-PUA domain
2 1 1 0 SCOP 55052 CheY-binding domain of CheA
2 1 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 0 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 0 SCOP 48208 Six-hairpin glycosidases
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 52768 Arginase/deacetylase
1 1 1 0 SCOP 52058 L domain-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 81901 HCP-like
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 64288 Chorismate lyase-like
1 1 1 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 103196 Roadblock/LC7 domain
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 56024 Phospholipase D/nuclease
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 1 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 1 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 1 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 142823 ComB-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 0 SCOP 57903 FYVE/PHD zinc finger
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 141066 ICP-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 0 SCOP 69025 Hypothetical protein MTH865
1 1 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 0 SCOP 49354 PapD-like
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 1 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 101332 Hypothetical protein MTH393
1 1 1 0 SCOP 75412 Hypothetical protein MTH1880
1 1 1 0 SCOP 103460 Sec-beta subunit
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 159071 TrmB C-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily ABC transporter transmembrane region
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily Prokaryotic lipoproteins and lipoprotein localization factors
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily Swiveling domain of dehydratase reactivase alpha subunit
SCOP superfamily Helical scaffold and wing domains of SecA
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Gated mechanosensitive channel
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily Arp2/3 complex subunits
SCOP superfamily PX domain
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Trimerization domain of TRAF
SCOP superfamily Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP superfamily RING/U-box
SCOP superfamily Colicin
SCOP superfamily gp120 core
SCOP superfamily SMAD MH1 domain
SCOP superfamily PheT/TilS domain
SCOP superfamily S-adenosylmethionine synthetase
SCOP superfamily C-terminal domain of arginine repressor
SCOP superfamily Ribosome recycling factor, RRF
SCOP superfamily TRADD, N-terminal domain
SCOP superfamily Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SCOP superfamily UBC-like
SCOP superfamily Periplasmic binding protein-like I
SCOP superfamily vWA-like
SCOP superfamily Phosphoglycerate mutase-like
SCOP superfamily LigB-like
SCOP superfamily Hedgehog/intein (Hint) domain
SCOP superfamily Thermostable phytase (3-phytase)
SCOP superfamily XRCC4, N-terminal domain
SCOP superfamily Periplasmic chaperone C-domain
SCOP superfamily Carboxypeptidase regulatory domain-like
SCOP superfamily Starch-binding domain-like
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Cadherin-like
SCOP superfamily Multiheme cytochromes
SCOP superfamily GTPase activation domain, GAP
SCOP superfamily A virus capsid protein alpha-helical domain
SCOP superfamily DNA repair protein MutS, domain III
SCOP superfamily R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP superfamily Regulator of G-protein signaling, RGS
SCOP superfamily ERP29 C domain-like
SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP superfamily EF-hand
SCOP superfamily Bromodomain
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Spectrin repeat
SCOP superfamily C-terminal effector domain of the bipartite response regulators
SCOP superfamily tRNA-binding arm
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily YfgJ-like
SCOP superfamily NE1680-like
SCOP superfamily BT0923-like
SCOP superfamily BLRF2-like
SCOP superfamily Bacterial polysaccharide co-polymerase-like
SCOP superfamily FlaG-like
SCOP superfamily PriA/YqbF domain
SCOP superfamily PrpR receptor domain-like
SCOP superfamily YopX-like
SCOP superfamily TerB-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily Rhomboid-like
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily STIV B116-like
SCOP superfamily MAL13P1.257-like
SCOP superfamily Allene oxide cyclase-like
SCOP superfamily Glu-tRNAGln amidotransferase C subunit
SCOP superfamily Hermes dimerisation domain
SCOP superfamily Indolic compounds 2,3-dioxygenase-like
SCOP superfamily Duffy binding domain-like
SCOP superfamily Rv1873-like
SCOP superfamily YoaC-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily LemA-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily ISY1 domain-like
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily EspA/CesA-like
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily Resistin
SCOP superfamily Rap/Ran-GAP
SCOP superfamily Recombination protein RecR
SCOP superfamily HSP90 C-terminal domain
SCOP superfamily Indigoidine synthase A-like
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Mitochondrial carrier
SCOP superfamily YceI-like
SCOP superfamily Formin homology 2 domain (FH2 domain)
SCOP superfamily Staphylocoagulase

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