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candidate division SR1 bacterium RAAC1_SR1_1 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; unclassified Bacteria; Bacteria candidate phyla; candidate division SR1; candidate division SR1 bacterium RAAC1_SR1_1

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1059 total
553 (52 %) with assignment
336 average length
44 % amino acid coverage
Domains: 822 total
349 unique superfamilies
125 unique families
284 average length
2.4 average superfamily size
58 % formed by duplication
Domain combinations: 170 domain pairs
402 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

70 62 35 6 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
25 21 15 1 SCOP 50249 Nucleic acid-binding proteins
22 22 8 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
12 12 10 1 SCOP 52374 Nucleotidylyl transferase
12 12 10 1 SCOP 55681 Class II aaRS and biotin synthetases
11 10 9 3 SCOP 54211 Ribosomal protein S5 domain 2-like
11 11 5 1 SCOP 109604 HD-domain/PDEase-like
10 10 3 0 SCOP 102114 Radical SAM enzymes
9 5 3 2 SCOP 53067 Actin-like ATPase domain
9 9 6 0 SCOP 46785 "Winged helix" DNA-binding domain
9 3 3 0 SCOP 51126 Pectin lyase-like
8 8 4 1 SCOP 52833 Thioredoxin-like
8 8 4 2 SCOP 53098 Ribonuclease H-like
8 8 5 0 SCOP 55811 Nudix
8 4 4 0 SCOP 49899 Concanavalin A-like lectins/glucanases
8 7 7 2 SCOP 50447 Translation proteins
8 8 7 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
8 4 4 0 SCOP 49299 PKD domain
7 7 2 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
7 7 3 1 SCOP 51735 NAD(P)-binding Rossmann-fold domains
7 7 3 1 SCOP 55120 Pseudouridine synthase
7 4 4 1 SCOP 54980 EF-G C-terminal domain-like
6 6 4 1 SCOP 56784 HAD-like
6 6 5 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
6 5 3 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 1 0 SCOP 103473 MFS general substrate transporter
5 5 3 0 SCOP 48452 TPR-like
5 4 2 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
5 5 4 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
5 5 4 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 4 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 3 0 SCOP 56300 Metallo-dependent phosphatases
4 4 3 1 SCOP 55174 Alpha-L RNA-binding motif
4 4 1 2 SCOP 53383 PLP-dependent transferases
4 4 2 1 SCOP 75217 alpha/beta knot
4 4 3 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
4 4 4 0 SCOP 52954 Class II aaRS ABD-related
4 4 3 0 SCOP 52172 CheY-like
4 4 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
4 4 3 1 SCOP 81301 Nucleotidyltransferase
4 4 2 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
4 4 3 0 SCOP 55154 CYTH-like phosphatases
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 3 3 0 SCOP 47781 RuvA domain 2-like
4 3 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
4 4 3 0 SCOP 50156 PDZ domain-like
4 4 3 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
4 4 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 3 0 SCOP 47090 PGBD-like
4 3 3 0 SCOP 51294 Hedgehog/intein (Hint) domain
4 4 4 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
4 4 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 3 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
3 3 3 0 SCOP 53271 PRTase-like
3 3 1 1 SCOP 53927 Cytidine deaminase-like
3 3 2 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
3 3 2 2 SCOP 48150 DNA-glycosylase
3 3 2 1 SCOP 52096 ClpP/crotonase
3 2 2 0 SCOP 48371 ARM repeat
3 3 1 0 SCOP 50182 Sm-like ribonucleoproteins
3 3 3 1 SCOP 54534 FKBP-like
3 3 3 0 SCOP 54001 Cysteine proteinases
3 3 3 2 SCOP 51998 PFL-like glycyl radical enzymes
3 3 3 0 SCOP 82771 GIY-YIG endonuclease
3 3 2 1 SCOP 53955 Lysozyme-like
3 3 2 0 SCOP 50800 PK beta-barrel domain-like
3 3 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 3 1 0 SCOP 90123 ABC transporter transmembrane region
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 0 SCOP 49265 Fibronectin type III
3 3 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 51556 Metallo-dependent hydrolases
2 2 1 0 SCOP 53474 alpha/beta-Hydrolases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 75304 Amidase signature (AS) enzymes
2 2 2 2 SCOP 51905 FAD/NAD(P)-binding domain
2 2 1 0 SCOP 54197 HIT-like
2 2 1 0 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 64182 DHH phosphoesterases
2 2 2 0 SCOP 47240 Ferritin-like
2 2 1 0 SCOP 52218 Flavoproteins
2 2 1 0 SCOP 51658 Xylose isomerase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 2 0 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
2 2 2 0 SCOP 52980 Restriction endonuclease-like
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 2 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 1 1 0 SCOP 53254 Phosphoglycerate mutase-like
2 2 2 1 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 53649 Alkaline phosphatase-like
2 2 2 1 SCOP 52499 Isochorismatase-like hydrolases
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
2 2 2 0 SCOP 55781 GAF domain-like
2 2 2 0 SCOP 55008 HMA, heavy metal-associated domain
2 1 1 0 SCOP 52058 L domain-like
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 54631 CBS-domain pair
2 2 2 0 SCOP 56601 beta-lactamase/transpeptidase-like
2 2 2 0 SCOP 46955 Putative DNA-binding domain
2 2 2 0 SCOP 54523 Pili subunits
2 2 1 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 1 0 SCOP 55797 PR-1-like
2 2 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
2 2 1 1 SCOP 56219 DNase I-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 1 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
2 1 1 0 SCOP 53041 Resolvase-like
2 2 2 0 SCOP 63817 Sortase
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 2 0 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 2 2 0 SCOP 54106 LysM domain
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 1 0 SCOP 52935 PK C-terminal domain-like
2 2 2 0 SCOP 55658 L9 N-domain-like
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 81271 TGS-like
2 2 2 0 SCOP 55261 GAD domain-like
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 52317 Class I glutamine amidotransferase-like
1 1 1 0 SCOP 53167 Purine and uridine phosphorylases
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 0 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 81606 PP2C-like
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 0 SCOP 51366 Ribulose-phoshate binding barrel
1 1 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 0 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 53597 Dihydrofolate reductase-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 100950 NagB/RpiA/CoA transferase-like
1 1 1 0 SCOP 51695 PLC-like phosphodiesterases
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 0 SCOP 50129 GroES-like
1 1 1 0 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 1 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51261 Duplicated hybrid motif
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 0 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 55205 EPT/RTPC-like
1 1 1 1 SCOP 51395 FMN-linked oxidoreductases
1 1 1 0 SCOP 48576 Terpenoid synthases
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 51419 PLP-binding barrel
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 53187 Zn-dependent exopeptidases
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 0 SCOP 63829 Calcium-dependent phosphotriesterase
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 0 SCOP 51445 (Trans)glycosidases
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 1 SCOP 51182 RmlC-like cupins
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 52151 FabD/lysophospholipase-like
1 1 1 0 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 53800 Chelatase
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 52091 SpoIIaa-like
1 1 1 0 SCOP 158446 IVS-encoded protein-like
1 1 1 0 SCOP 55724 Mog1p/PsbP-like
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 47413 lambda repressor-like DNA-binding domains
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 53300 vWA-like
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 52467 DHS-like NAD/FAD-binding domain
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 111369 HlyD-like secretion proteins
1 1 1 1 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
1 1 1 1 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 140931 Fic-like
1 1 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 55846 N-acetylmuramoyl-L-alanine amidase-like
1 1 1 0 SCOP 82171 DPP6 N-terminal domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 0 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 69318 Integrin alpha N-terminal domain
1 1 1 1 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 101898 NHL repeat
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 0 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 52922 TK C-terminal domain-like
1 1 1 1 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 49384 Carbohydrate-binding domain
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 1 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 116915 Hypothetical protein YqbG
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 50621 Alanine racemase C-terminal domain-like
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 53920 Fe-only hydrogenase
1 1 1 0 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 0 SCOP 51984 MurCD N-terminal domain
1 1 1 0 SCOP 103647 TSP type-3 repeat
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
1 1 1 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 1 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 160996 HI0933 insert domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Hypothetical protein YjiA, C-terminal domain
SCOP superfamily FYSH domain
SCOP superfamily Proguanylin
SCOP superfamily Mago nashi protein
SCOP superfamily Baseplate structural protein gp8
SCOP superfamily Prokaryotic lipoproteins and lipoprotein localization factors
SCOP superfamily Collagen-binding domain
SCOP superfamily PUA domain-like
SCOP superfamily Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP superfamily beta-sandwich domain of Sec23/24
SCOP superfamily RuBisCo LSMT C-terminal, substrate-binding domain
SCOP superfamily F1F0 ATP synthase subunit B, membrane domain
SCOP superfamily Cytochrome c oxidase subunit III-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Fumarate reductase respiratory complex transmembrane subunits
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Rad50 coiled-coil Zn hook
SCOP superfamily Glycerol-3-phosphate (1)-acyltransferase
SCOP superfamily Cell wall binding repeat
SCOP superfamily Phase 1 flagellin
SCOP superfamily DNA-binding domain of intron-encoded endonucleases
SCOP superfamily YWTD domain
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Rotavirus nonstructural proteins
SCOP superfamily Tropomyosin
SCOP superfamily RING/U-box
SCOP superfamily FnI-like domain
SCOP superfamily EGF/Laminin
SCOP superfamily Anthrax protective antigen
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily DNA/RNA polymerases
SCOP superfamily ADP-ribosylation
SCOP superfamily N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SCOP superfamily Tetrahydrobiopterin biosynthesis enzymes-like
SCOP superfamily Metalloproteases ("zincins"), catalytic domain
SCOP superfamily N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
SCOP superfamily Subtilisin inhibitor
SCOP superfamily eIF1-like
SCOP superfamily Arginase/deacetylase
SCOP superfamily Subtilisin-like
SCOP superfamily Outer arm dynein light chain 1
SCOP superfamily Trimeric LpxA-like enzymes
SCOP superfamily Outer surface protein
SCOP superfamily Head domain of nucleotide exchange factor GrpE
SCOP superfamily Quinoprotein alcohol dehydrogenase-like
SCOP superfamily PH domain-like
SCOP superfamily Baculovirus p35 protein
SCOP superfamily Galactose-binding domain-like
SCOP superfamily TRAF domain-like
SCOP superfamily Cupredoxins
SCOP superfamily p53-like transcription factors
SCOP superfamily Bacterial adhesins
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Immunoglobulin
SCOP superfamily Serum albumin-like
SCOP superfamily gene 59 helicase assembly protein
SCOP superfamily Sec7 domain
SCOP superfamily Ribbon-helix-helix
SCOP superfamily 4-helical cytokines
SCOP superfamily Apolipoprotein
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily MAPEG domain-like
SCOP superfamily SNF-like
SCOP superfamily ATP synthase D chain-like
SCOP superfamily SSO1389-like
SCOP superfamily MTH889-like
SCOP superfamily FlaG-like
SCOP superfamily PMT central region-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily MPN010-like
SCOP superfamily XisI-like
SCOP superfamily YwmB-like
SCOP superfamily AF2212/PG0164-like
SCOP superfamily GUN4-like
SCOP superfamily TM0693-like
SCOP superfamily Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain
SCOP superfamily OmpH-like
SCOP superfamily Glycolipid transfer protein, GLTP
SCOP superfamily DnaK suppressor protein DksA, alpha-hairpin domain
SCOP superfamily G protein-binding domain
SCOP superfamily Supernatant protein factor (SPF), C-terminal domain
SCOP superfamily Superantigen MAM
SCOP superfamily Staphylocoagulase
SCOP superfamily SPOC domain-like

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