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Saccharomyces cerevisiae CLIB382 superfamily assignments

Taxonomy
Taxonomy browser entry

Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; Saccharomyces cerevisiae CLIB382

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 937 total
312 (33 %) with assignment
177 average length
39 % amino acid coverage
Domains: 384 total
219 unique superfamilies
102 unique families
207 average length
1.8 average superfamily size
43 % formed by duplication
Domain combinations: 49 domain pairs
242 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

19 18 5 2 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
12 12 5 3 SCOP 51735 NAD(P)-binding Rossmann-fold domains
10 5 3 1 SCOP 53067 Actin-like ATPase domain
8 8 4 1 SCOP 47113 Histone-fold
7 7 2 1 SCOP 52833 Thioredoxin-like
7 7 3 0 SCOP 50182 Sm-like ribonucleoproteins
5 5 4 2 SCOP 50249 Nucleic acid-binding proteins
4 4 2 0 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
4 3 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
4 4 3 1 SCOP 46689 Homeodomain-like
4 4 1 0 SCOP 103506 Mitochondrial carrier
4 4 1 1 SCOP 54495 UBC-like
4 4 3 2 SCOP 51445 (Trans)glycosidases
4 3 3 0 SCOP 54928 RNA-binding domain, RBD
4 3 3 1 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
4 2 2 0 SCOP 57756 Retrovirus zinc finger-like domains
3 3 1 1 SCOP 52317 Class I glutamine amidotransferase-like
3 2 2 1 SCOP 52374 Nucleotidylyl transferase
3 2 2 1 SCOP 46785 "Winged helix" DNA-binding domain
3 3 2 0 SCOP 50129 GroES-like
3 3 1 0 SCOP 53850 Periplasmic binding protein-like II
3 3 3 0 SCOP 54211 Ribosomal protein S5 domain 2-like
3 3 3 1 SCOP 50978 WD40 repeat-like
3 2 2 0 SCOP 55753 Actin depolymerizing proteins
3 3 2 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
3 3 2 1 SCOP 50891 Cyclophilin-like
3 2 2 0 SCOP 57997 Tropomyosin
3 3 1 1 SCOP 51604 Enolase C-terminal domain-like
3 3 2 0 SCOP 57667 beta-beta-alpha zinc fingers
3 3 1 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
3 3 2 2 SCOP 50729 PH domain-like
3 3 1 1 SCOP 54826 Enolase N-terminal domain-like
3 3 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 1 SCOP 53474 alpha/beta-Hydrolases
2 2 2 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 0 SCOP 56808 Ribosomal protein L1
2 2 2 2 SCOP 51905 FAD/NAD(P)-binding domain
2 2 1 1 SCOP 56112 Protein kinase-like (PK-like)
2 2 1 0 SCOP 56784 HAD-like
2 2 1 1 SCOP 52166 Ribosomal protein L4
2 2 2 0 SCOP 103473 MFS general substrate transporter
2 2 2 1 SCOP 52402 Adenine nucleotide alpha hydrolases-like
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 2 0 SCOP 54292 2Fe-2S ferredoxin-like
2 2 2 0 SCOP 55811 Nudix
2 2 2 0 SCOP 49764 HSP20-like chaperones
2 2 2 1 SCOP 48371 ARM repeat
2 2 1 1 SCOP 54236 Ubiquitin-like
2 2 1 0 SCOP 144122 Tim10-like
2 2 1 1 SCOP 64356 SNARE-like
2 2 2 0 SCOP 55315 L30e-like
2 2 1 1 SCOP 160683 YNR034W-A-like
2 2 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 1 SCOP 57868 Metallothionein
2 2 1 0 SCOP 54897 Protease propeptides/inhibitors
2 1 1 1 SCOP 69645 Arp2/3 complex subunits
2 2 1 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
2 2 2 0 SCOP 57850 RING/U-box
2 2 2 1 SCOP 55159 eIF1-like
2 2 2 1 SCOP 55008 HMA, heavy metal-associated domain
2 2 1 1 SCOP 50447 Translation proteins
2 2 2 1 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 1 SCOP 56024 Phospholipase D/nuclease
2 2 2 0 SCOP 47592 SWIB/MDM2 domain
2 2 2 1 SCOP 52777 CoA-dependent acyltransferases
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 1 0 SCOP 51011 Glycosyl hydrolase domain
2 2 2 0 SCOP 63380 Riboflavin synthase domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
2 2 1 1 SCOP 69000 FAD-dependent thiol oxidase
1 1 1 0 SCOP 51556 Metallo-dependent hydrolases
1 1 1 0 SCOP 56059 Glutathione synthetase ATP-binding domain-like
1 1 1 0 SCOP 53271 PRTase-like
1 1 1 0 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 81606 PP2C-like
1 1 1 1 SCOP 53697 SIS domain
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 0 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 53137 Translational machinery components
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55120 Pseudouridine synthase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 1 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
1 1 1 0 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 1 SCOP 53383 PLP-dependent transferases
1 1 1 0 SCOP 52980 Restriction endonuclease-like
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 51283 dUTPase-like
1 1 1 0 SCOP 54862 4Fe-4S ferredoxins
1 1 1 0 SCOP 48150 DNA-glycosylase
1 1 1 0 SCOP 48452 TPR-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 0 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 53254 Phosphoglycerate mutase-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 82657 BolA-like
1 1 1 0 SCOP 54060 His-Me finger endonucleases
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 50985 RCC1/BLIP-II
1 1 1 1 SCOP 89957 MTH1187/YkoF-like
1 1 1 0 SCOP 52949 Macro domain-like
1 1 1 0 SCOP 50475 FMN-binding split barrel
1 1 1 1 SCOP 47095 HMG-box
1 1 1 0 SCOP 143744 GlcG-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 54762 Signal recognition particle alu RNA binding heterodimer, SRP9/14
1 1 1 1 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 0 SCOP 142897 TFB5-like
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 1 SCOP 81524 14 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 46579 Prefoldin
1 1 1 1 SCOP 54427 NTF2-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
1 1 1 0 SCOP 81406 Mitochondrial cytochrome c oxidase subunit IV
1 1 1 0 SCOP 50630 Acid proteases
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 1 SCOP 48439 Protein prenylyltransferase
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 49329 Cu,Zn superoxide dismutase-like
1 1 1 1 SCOP 51126 Pectin lyase-like
1 1 1 0 SCOP 51197 Clavaminate synthase-like
1 1 1 1 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 161219 CHY zinc finger-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 50044 SH3-domain
1 1 1 0 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
1 1 1 1 SCOP 49777 PEBP-like
1 1 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
1 1 1 1 SCOP 69060 Arp2/3 complex 21 kDa subunit ARPC3
1 1 1 0 SCOP 81427 Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
1 1 1 1 SCOP 89975 Hypothetical protein Yml108w
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 1 SCOP 55770 Profilin (actin-binding protein)
1 1 1 1 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 64268 PX domain
1 1 1 0 SCOP 47576 Calponin-homology domain, CH-domain
1 1 1 1 SCOP 54695 POZ domain
1 1 1 0 SCOP 52058 L domain-like
1 1 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 1 SCOP 54631 CBS-domain pair
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 0 SCOP 52016 LeuD/IlvD-like
1 1 1 0 SCOP 57783 Zinc beta-ribbon
1 1 1 0 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 109910 YgfY-like
1 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 1 SCOP 46548 alpha-helical ferredoxin
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 51246 Rudiment single hybrid motif
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 47661 t-snare proteins
1 1 1 1 SCOP 52922 TK C-terminal domain-like
1 1 1 0 SCOP 57903 FYVE/PHD zinc finger
1 1 1 0 SCOP 52440 PreATP-grasp domain
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 47459 HLH, helix-loop-helix DNA-binding domain
1 1 1 1 SCOP 55637 Cell cycle regulatory proteins
1 1 1 1 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 63748 Tudor/PWWP/MBT
1 1 1 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
1 1 1 0 SCOP 74924 Cap-Gly domain
1 1 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47396 Transcription factor IIA (TFIIA), alpha-helical domain
1 1 1 0 SCOP 158573 GINS helical bundle-like
1 1 1 0 SCOP 69012 alpha-ketoacid dehydrogenase kinase, N-terminal domain
1 1 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 1 SCOP 81531 Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
1 1 1 0 SCOP 64602 F1 ATPase inhibitor, IF1, C-terminal domain
1 1 1 0 SCOP 57959 Leucine zipper domain
1 1 1 0 SCOP 51045 WW domain
1 1 1 0 SCOP 57701 Zn2/Cys6 DNA-binding domain
1 1 1 1 SCOP 50784 Transcription factor IIA (TFIIA), beta-barrel domain
1 1 1 0 SCOP 109715 DEK C-terminal domain
1 1 1 0 SCOP 47157 Mitochondrial import receptor subunit Tom20
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex

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The following superfamilies have one or more weak hits:

SCOP superfamily YajQ-like
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily Gametocyte protein Pfg27
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Tp47 lipoprotein, N-terminal domain
SCOP superfamily FAS1 domain
SCOP superfamily FF domain
SCOP superfamily Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIa
SCOP superfamily Voltage-gated potassium channels
SCOP superfamily Family A G protein-coupled receptor-like
SCOP superfamily Siroheme synthase middle domains-like
SCOP superfamily V-region of surface antigen I/II (SA I/II, PAC)
SCOP superfamily P-domain of calnexin/calreticulin
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Cysteine-rich domain
SCOP superfamily Hypothetical protein MTH1184
SCOP superfamily Methylamine dehydrogenase, L chain
SCOP superfamily EGF/Laminin
SCOP superfamily Colicin
SCOP superfamily N-terminal nucleophile aminohydrolases (Ntn hydrolases)
SCOP superfamily Class II aaRS and biotin synthetases
SCOP superfamily Ribonuclease PH domain 2-like
SCOP superfamily L9 N-domain-like
SCOP superfamily Ribosome recycling factor, RRF
SCOP superfamily Fe,Mn superoxide dismutase (SOD), C-terminal domain
SCOP superfamily Cdc48 domain 2-like
SCOP superfamily Interleukin 8-like chemokines
SCOP superfamily MurD-like peptide ligases, peptide-binding domain
SCOP superfamily Ribonuclease H-like
SCOP superfamily PK C-terminal domain-like
SCOP superfamily Caspase-like
SCOP superfamily Mss4-like
SCOP superfamily Quinoprotein alcohol dehydrogenase-like
SCOP superfamily N-terminal domains of the minor coat protein g3p
SCOP superfamily Group II dsDNA viruses VP
SCOP superfamily Cna protein B-type domain
SCOP superfamily Transducin (heterotrimeric G protein), gamma chain
SCOP superfamily Chorismate mutase II
SCOP superfamily Sec7 domain
SCOP superfamily N-terminal domain of cbl (N-cbl)
SCOP superfamily Apolipoprotein
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily Spectrin repeat
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily FlhC-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily TSP9-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily USP8 N-terminal domain-like
SCOP superfamily LemA-like
SCOP superfamily Coronavirus NSP7-like
SCOP superfamily Expressed protein At2g23090/F21P24.15
SCOP superfamily AN1-like Zinc finger
SCOP superfamily Hypothetical protein PA1324
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily HBS1-like domain
SCOP superfamily KRAB domain (Kruppel-associated box)
SCOP superfamily Proline/betaine transporter ProP, C-terminal cytoplasmic domain
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Roadblock/LC7 domain
SCOP superfamily Hypothetical protein ST1625
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like

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