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Methanosphaerula palustris E1-9c superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula; Methanosphaerula palustris; Methanosphaerula palustris E1-9c

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2655 total
1788 (67 %) with assignment
308 average length
66 % amino acid coverage
Domains: 2880 total
594 unique superfamilies
305 unique families
300 average length
4.8 average superfamily size
79 % formed by duplication
Domain combinations: 370 domain pairs
907 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

208 80 65 0 SCOP 55785 PYP-like sensor domain (PAS domain)
157 142 40 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
150 34 33 0 SCOP 49299 PKD domain
83 80 24 1 SCOP 46785 "Winged helix" DNA-binding domain
61 61 50 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
60 58 8 7 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
56 34 31 0 SCOP 49785 Galactose-binding domain-like
50 49 21 7 SCOP 51735 NAD(P)-binding Rossmann-fold domains
49 48 37 2 SCOP 52172 CheY-like
44 35 26 0 SCOP 51126 Pectin lyase-like
36 36 28 0 SCOP 63446 Type I dockerin domain
35 34 12 0 SCOP 54862 4Fe-4S ferredoxins
33 33 7 0 SCOP 102114 Radical SAM enzymes
28 28 2 4 SCOP 53383 PLP-dependent transferases
27 27 5 1 SCOP 52218 Flavoproteins
27 21 14 0 SCOP 54631 CBS-domain pair
25 25 4 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
25 20 14 3 SCOP 50249 Nucleic acid-binding proteins
23 23 2 0 SCOP 103473 MFS general substrate transporter
23 19 10 1 SCOP 53850 Periplasmic binding protein-like II
23 21 21 0 SCOP 55781 GAF domain-like
20 14 6 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
20 20 10 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
20 20 1 1 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
20 20 15 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
19 19 7 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
18 13 6 0 SCOP 48452 TPR-like
17 17 4 2 SCOP 52317 Class I glutamine amidotransferase-like
16 16 5 3 SCOP 53474 alpha/beta-Hydrolases
16 16 6 1 SCOP 52833 Thioredoxin-like
16 15 14 4 SCOP 54211 Ribosomal protein S5 domain 2-like
16 14 4 2 SCOP 51161 Trimeric LpxA-like enzymes
16 14 7 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
14 11 9 2 SCOP 53067 Actin-like ATPase domain
14 12 8 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
13 12 9 1 SCOP 56059 Glutathione synthetase ATP-binding domain-like
13 12 3 1 SCOP 161098 MetI-like
13 13 8 2 SCOP 51905 FAD/NAD(P)-binding domain
13 7 2 0 SCOP 48371 ARM repeat
13 13 3 0 SCOP 55469 FMN-dependent nitroreductase-like
13 13 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
12 12 6 1 SCOP 56784 HAD-like
12 12 8 2 SCOP 52374 Nucleotidylyl transferase
12 12 10 2 SCOP 55681 Class II aaRS and biotin synthetases
12 11 11 0 SCOP 63829 Calcium-dependent phosphotriesterase
12 12 3 1 SCOP 56801 Acetyl-CoA synthetase-like
12 12 5 0 SCOP 50341 CheW-like
11 11 6 0 SCOP 56300 Metallo-dependent phosphatases
11 11 2 2 SCOP 50475 FMN-binding split barrel
11 11 4 1 SCOP 53807 "Helical backbone" metal receptor
11 10 7 0 SCOP 57802 Rubredoxin-like
11 8 7 0 SCOP 55021 ACT-like
11 5 4 0 SCOP 49464 Carboxypeptidase regulatory domain-like
10 10 4 3 SCOP 51569 Aldolase
10 10 3 4 SCOP 51366 Ribulose-phoshate binding barrel
10 10 5 0 SCOP 46548 alpha-helical ferredoxin
10 8 7 1 SCOP 101898 NHL repeat
9 9 4 1 SCOP 52980 Restriction endonuclease-like
9 9 3 0 SCOP 46689 Homeodomain-like
9 5 2 0 SCOP 55945 TATA-box binding protein-like
9 3 1 1 SCOP 53738 Phosphoglucomutase, first 3 domains
8 8 4 1 SCOP 51556 Metallo-dependent hydrolases
8 8 2 2 SCOP 51182 RmlC-like cupins
8 8 4 0 SCOP 52266 SGNH hydrolase
8 8 6 2 SCOP 50447 Translation proteins
8 8 7 1 SCOP 88697 PUA domain-like
8 8 5 0 SCOP 81665 Calcium ATPase, transmembrane domain M
8 8 2 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
8 7 3 1 SCOP 56042 PurM C-terminal domain-like
8 7 3 1 SCOP 55326 PurM N-terminal domain-like
8 8 5 0 SCOP 81653 Calcium ATPase, transduction domain A
7 7 3 1 SCOP 51395 FMN-linked oxidoreductases
7 7 3 0 SCOP 50692 ADC-like
7 6 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
7 5 4 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
7 4 3 1 SCOP 56024 Phospholipase D/nuclease
6 6 1 1 SCOP 57829 Zn-binding ribosomal proteins
6 6 1 1 SCOP 53790 Tetrapyrrole methylase
6 6 5 1 SCOP 64182 DHH phosphoesterases
6 6 3 1 SCOP 47240 Ferritin-like
6 6 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
6 6 4 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 6 1 1 SCOP 54427 NTF2-like
6 6 5 0 SCOP 54001 Cysteine proteinases
6 6 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
6 4 3 0 SCOP 49503 Cupredoxins
6 6 3 0 SCOP 89550 PHP domain-like
6 6 2 1 SCOP 54913 GlnB-like
6 6 4 2 SCOP 52467 DHS-like NAD/FAD-binding domain
6 6 2 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
6 4 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 5 3 0 SCOP 49384 Carbohydrate-binding domain
6 4 3 1 SCOP 52210 Succinyl-CoA synthetase domains
5 5 3 1 SCOP 53271 PRTase-like
5 5 2 2 SCOP 53613 Ribokinase-like
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 1 1 SCOP 53597 Dihydrofolate reductase-like
5 5 1 1 SCOP 51658 Xylose isomerase-like
5 5 3 1 SCOP 53098 Ribonuclease H-like
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 5 3 0 SCOP 51430 NAD(P)-linked oxidoreductase
5 4 4 0 SCOP 55008 HMA, heavy metal-associated domain
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 5 2 0 SCOP 54909 Dimeric alpha+beta barrel
5 5 1 0 SCOP 143100 TTHA1013/TTHA0281-like
5 5 3 0 SCOP 56349 DNA breaking-rejoining enzymes
5 5 4 0 SCOP 81301 Nucleotidyltransferase
5 5 5 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
5 5 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
5 5 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
5 5 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
4 4 4 0 SCOP 56112 Protein kinase-like (PK-like)
4 4 3 1 SCOP 53137 Translational machinery components
4 4 3 1 SCOP 55920 Creatinase/aminopeptidase
4 4 4 2 SCOP 55120 Pseudouridine synthase
4 4 3 1 SCOP 100950 NagB/RpiA/CoA transferase-like
4 4 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
4 3 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
4 4 3 2 SCOP 55821 YrdC/RibB
4 4 3 0 SCOP 48150 DNA-glycosylase
4 4 3 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 1 0 SCOP 54285 MoaD/ThiS
4 4 3 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 2 1 SCOP 109604 HD-domain/PDEase-like
4 4 3 1 SCOP 55315 L30e-like
4 4 3 1 SCOP 88723 PIN domain-like
4 4 2 0 SCOP 69118 AhpD-like
4 4 3 0 SCOP 81324 Voltage-gated potassium channels
4 4 3 1 SCOP 51717 Dihydropteroate synthetase-like
4 3 2 0 SCOP 46955 Putative DNA-binding domain
4 4 2 1 SCOP 52016 LeuD/IlvD-like
4 4 4 0 SCOP 56524 Oxidoreductase molybdopterin-binding domain
4 3 2 0 SCOP 116734 DNA methylase specificity domain
4 4 1 0 SCOP 160935 VPA0735-like
4 3 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
4 2 1 0 SCOP 53901 Thiolase-like
4 4 2 0 SCOP 50331 MOP-like
4 4 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
4 4 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
4 4 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 4 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
4 4 2 0 SCOP 52922 TK C-terminal domain-like
4 3 3 1 SCOP 52440 PreATP-grasp domain
4 4 4 0 SCOP 74853 Lamin A/C globular tail domain
4 4 2 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
4 4 2 0 SCOP 63380 Riboflavin synthase domain-like
4 4 4 1 SCOP 63882 MoeA N-terminal region -like
4 4 1 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
4 2 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
3 3 2 1 SCOP 53927 Cytidine deaminase-like
3 3 2 1 SCOP 52141 Uracil-DNA glycosylase-like
3 3 1 1 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 2 2 SCOP 75217 alpha/beta knot
3 3 2 2 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
3 3 1 1 SCOP 50129 GroES-like
3 3 2 2 SCOP 53720 ALDH-like
3 3 3 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 2 2 0 SCOP 55811 Nudix
3 3 1 1 SCOP 56796 Dehydroquinate synthase-like
3 3 2 1 SCOP 53187 Zn-dependent exopeptidases
3 3 2 0 SCOP 49764 HSP20-like chaperones
3 3 1 0 SCOP 51726 UROD/MetE-like
3 3 1 1 SCOP 52499 Isochorismatase-like hydrolases
3 3 1 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
3 3 1 1 SCOP 53639 AraD/HMP-PK domain-like
3 3 1 0 SCOP 49777 PEBP-like
3 3 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
3 3 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 3 0 SCOP 51998 PFL-like glycyl radical enzymes
3 3 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
3 3 1 0 SCOP 54786 YcfA/nrd intein domain
3 3 1 3 SCOP 56821 Prismane protein-like
3 3 2 1 SCOP 52738 Methylesterase CheB, C-terminal domain
3 2 2 0 SCOP 52777 CoA-dependent acyltransferases
3 3 3 0 SCOP 63867 MoeA C-terminal domain-like
3 3 1 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 2 0 SCOP 69304 Tricorn protease N-terminal domain
3 3 3 0 SCOP 63825 YWTD domain
3 3 2 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 3 2 0 SCOP 143555 FwdE-like
3 3 2 1 SCOP 52935 PK C-terminal domain-like
3 3 2 1 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
3 2 2 0 SCOP 116726 TrkA C-terminal domain-like
3 3 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
3 3 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 2 0 SCOP 143597 YojJ-like
2 2 2 0 SCOP 81606 PP2C-like
2 2 2 2 SCOP 53697 SIS domain
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 2 0 SCOP 54197 HIT-like
2 2 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 1 1 SCOP 53748 Phosphoglycerate kinase
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 1 SCOP 82649 SufE/NifU
2 2 2 1 SCOP 109755 PhoU-like
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 0 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 1 0 SCOP 56770 HydA/Nqo6-like
2 2 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
2 2 2 0 SCOP 52096 ClpP/crotonase
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 53254 Phosphoglycerate mutase-like
2 2 2 2 SCOP 55205 EPT/RTPC-like
2 2 1 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 1 1 SCOP 51419 PLP-binding barrel
2 2 2 1 SCOP 56672 DNA/RNA polymerases
2 2 2 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 0 SCOP 46579 Prefoldin
2 2 1 0 SCOP 53649 Alkaline phosphatase-like
2 2 1 0 SCOP 63393 RNA polymerase subunits
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 1 1 1 SCOP 74650 Galactose mutarotase-like
2 2 2 0 SCOP 47819 HRDC-like
2 2 2 1 SCOP 48208 Six-hairpin glycosidases
2 1 1 1 SCOP 48113 Heme-dependent peroxidases
2 2 1 0 SCOP 103486 V-type ATP synthase subunit C
2 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 2 SCOP 52768 Arginase/deacetylase
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 2 0 SCOP 57662 Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
2 2 1 0 SCOP 101478 ADP-ribosylglycohydrolase
2 2 2 0 SCOP 52091 SpoIIaa-like
2 2 2 0 SCOP 56601 beta-lactamase/transpeptidase-like
2 2 1 1 SCOP 102712 JAB1/MPN domain
2 2 2 0 SCOP 47598 Ribbon-helix-helix
2 2 1 0 SCOP 118196 YaeB-like
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 1 0 SCOP 143011 RelE-like
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 1 0 SCOP 55331 Tautomerase/MIF
2 2 2 0 SCOP 57783 Zinc beta-ribbon
2 2 1 0 SCOP 53300 vWA-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 1 SCOP 56762 HydB/Nqo4-like
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 1 1 SCOP 143081 BB1717-like
2 2 2 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 2 2 0 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 1 1 0 SCOP 118215 Proton glutamate symport protein
2 2 1 0 SCOP 102588 LmbE-like
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 0 SCOP 140931 Fic-like
2 2 1 1 SCOP 144010 CofE-like
2 2 2 0 SCOP 52242 Cobalamin (vitamin B12)-binding domain
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 0 SCOP 53146 Nitrogenase accessory factor-like
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 2 1 1 SCOP 103039 CheC-like
2 2 2 0 SCOP 49452 Starch-binding domain-like
2 2 2 0 SCOP 82171 DPP6 N-terminal domain-like
2 2 1 0 SCOP 55136 Probable bacterial effector-binding domain
2 2 1 0 SCOP 46565 Chaperone J-domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 2 0 SCOP 143437 THUMP domain-like
2 1 1 0 SCOP 158372 AF1782-like
2 2 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 2 0 SCOP 52743 Subtilisin-like
2 2 1 1 SCOP 143865 CorA soluble domain-like
2 2 1 1 SCOP 48592 GroEL equatorial domain-like
2 2 2 0 SCOP 50156 PDZ domain-like
2 2 2 1 SCOP 51246 Rudiment single hybrid motif
2 2 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
2 2 1 0 SCOP 56176 FAD-binding/transporter-associated domain-like
2 1 1 0 SCOP 117281 Kelch motif
2 2 1 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 2 2 0 SCOP 52009 Phosphohistidine domain
2 2 1 0 SCOP 140371 Vng1086c-like
2 2 2 0 SCOP 158472 HAMP domain-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 0 SCOP 51294 Hedgehog/intein (Hint) domain
2 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
2 2 2 0 SCOP 117074 Hypothetical protein PA1324
2 2 1 1 SCOP 52029 GroEL apical domain-like
2 2 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 1 SCOP 56327 LDH C-terminal domain-like
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 2 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 1 1 0 SCOP 117987 CRISPR-associated protein
2 2 1 0 SCOP 81271 TGS-like
2 2 1 1 SCOP 143724 PHP14-like
2 2 2 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
2 2 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54849 GroEL-intermediate domain like
2 2 2 0 SCOP 88802 Pre-PUA domain
2 2 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
2 2 1 0 SCOP 54585 Cdc48 domain 2-like
2 2 1 0 SCOP 140356 PPK N-terminal domain-like
2 1 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
2 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 0 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 0 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 75169 DsrEFH-like
1 1 1 0 SCOP 47113 Histone-fold
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 53328 Formyltransferase
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 51445 (Trans)glycosidases
1 1 1 0 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 56317 Carbon-nitrogen hydrolase
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 0 SCOP 48439 Protein prenylyltransferase
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53056 beta-carbonic anhydrase, cab
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 55418 eIF4e-like
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 81342 Transmembrane di-heme cytochromes
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 143243 Nqo5-like
1 1 1 0 SCOP 141571 Pentapeptide repeat-like
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 0 SCOP 50022 ISP domain
1 1 1 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 159501 EreA/ChaN-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 53822 Periplasmic binding protein-like I
1 1 1 0 SCOP 49879 SMAD/FHA domain
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 82153 FAS1 domain
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 1 SCOP 53213 LigB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 159888 YdhG-like
1 1 1 0 SCOP 140478 LemA-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 64288 Chorismate lyase-like
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 103196 Roadblock/LC7 domain
1 1 1 0 SCOP 117070 LEA14-like
1 1 1 0 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 160379 SP0830-like
1 1 1 0 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 75005 Arabinanase/levansucrase/invertase
1 1 1 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 1 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 1 SCOP 56574 Serpins
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 0 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 0 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 102891 Hypothetical protein Ta1206
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 69695 SRP19
1 1 1 0 SCOP 101756 Hypothetical protein YgiW
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 48008 GntR ligand-binding domain-like
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 0 SCOP 55979 DNA clamp
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 89372 Fucose-specific lectin
1 1 1 0 SCOP 81923 Double Clp-N motif
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 47188 Hemerythrin-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 1 SCOP 111342 CbiD-like
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 51971 Nucleotide-binding domain
1 1 1 0 SCOP 141066 ICP-like
1 1 1 0 SCOP 49265 Fibronectin type III
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 1 SCOP 48334 DNA repair protein MutS, domain III
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 0 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 0 SCOP 63712 Nicotinic receptor ligand binding domain-like
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 55052 CheY-binding domain of CheA
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily ABC transporter transmembrane region
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily CoA-transferase family III (CaiB/BaiF)
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily Collagen-binding domain
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily HCP-like
SCOP superfamily Family 10 polysaccharide lyase
SCOP superfamily PsbU/PolX domain-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Fumarate reductase respiratory complex transmembrane subunits
SCOP superfamily Integrin alpha N-terminal domain
SCOP superfamily Integrin domains
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Bacterial hemolysins
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Cysteine-rich domain
SCOP superfamily ArfGap/RecO-like zinc finger
SCOP superfamily RING/U-box
SCOP superfamily Hypothetical protein MTH1184
SCOP superfamily Growth factor receptor domain
SCOP superfamily Sporulation response regulatory protein Spo0B
SCOP superfamily FAD-linked oxidases, C-terminal domain
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily Toll/Interleukin receptor TIR domain
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily YVTN repeat-like/Quinoprotein amine dehydrogenase
SCOP superfamily Sialidases
SCOP superfamily Herpes virus serine proteinase, assemblin
SCOP superfamily Spermadhesin, CUB domain
SCOP superfamily Ecotin, trypsin inhibitor
SCOP superfamily Cna protein B-type domain
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Multiheme cytochromes
SCOP superfamily Nuclear receptor ligand-binding domain
SCOP superfamily Ankyrin repeat
SCOP superfamily Methionine synthase domain
SCOP superfamily SWIB/MDM2 domain
SCOP superfamily C-terminal effector domain of the bipartite response regulators
SCOP superfamily Gam-like
SCOP superfamily YfgJ-like
SCOP superfamily SNF-like
SCOP superfamily NMB0513-like
SCOP superfamily YmcC-like
SCOP superfamily SO1590-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily NOB1 zinc finger-like
SCOP superfamily FdhE-like
SCOP superfamily SARS receptor-binding domain-like
SCOP superfamily TM1622-like
SCOP superfamily YefM-like
SCOP superfamily GatD N-terminal domain-like
SCOP superfamily CalX-like
SCOP superfamily Flagellar hook protein flgE
SCOP superfamily TrmE connector domain
SCOP superfamily VP4 membrane interaction domain
SCOP superfamily ThiG-like
SCOP superfamily Bacteriocin immunity protein-like
SCOP superfamily Domain from hypothetical 2610208m17rik protein
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Sensory domain-like
SCOP superfamily NSFL1 (p97 ATPase) cofactor p47, SEP domain
SCOP superfamily Mob1/phocein

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