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Thermovibrio ammonificans HB-1 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Aquificae; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Thermovibrio; Thermovibrio ammonificans; Thermovibrio ammonificans HB-1

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1813 total
1220 (67 %) with assignment
305 average length
63 % amino acid coverage
Domains: 1779 total
569 unique superfamilies
377 unique families
287 average length
3.1 average superfamily size
68 % formed by duplication
Domain combinations: 328 domain pairs
737 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

143 128 51 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
37 36 17 7 SCOP 51735 NAD(P)-binding Rossmann-fold domains
29 22 17 2 SCOP 50249 Nucleic acid-binding proteins
27 17 10 0 SCOP 48452 TPR-like
26 26 8 8 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
25 25 5 2 SCOP 102114 Radical SAM enzymes
22 20 11 0 SCOP 46785 "Winged helix" DNA-binding domain
20 16 5 1 SCOP 48695 Multiheme cytochromes
18 11 6 1 SCOP 53067 Actin-like ATPase domain
18 15 12 6 SCOP 54211 Ribosomal protein S5 domain 2-like
17 15 8 4 SCOP 53448 Nucleotide-diphospho-sugar transferases
17 17 6 0 SCOP 54862 4Fe-4S ferredoxins
16 14 6 3 SCOP 51905 FAD/NAD(P)-binding domain
16 15 11 1 SCOP 109604 HD-domain/PDEase-like
15 15 10 4 SCOP 52374 Nucleotidylyl transferase
15 15 1 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
14 14 3 1 SCOP 52833 Thioredoxin-like
13 12 8 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
13 13 6 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
13 13 11 1 SCOP 55681 Class II aaRS and biotin synthetases
12 10 6 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
12 12 2 3 SCOP 53383 PLP-dependent transferases
12 12 5 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
12 12 5 1 SCOP 55073 Nucleotide cyclase
12 10 10 0 SCOP 55021 ACT-like
11 11 4 4 SCOP 51569 Aldolase
10 9 8 2 SCOP 50447 Translation proteins
10 10 6 1 SCOP 52172 CheY-like
10 10 7 2 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
10 9 7 3 SCOP 81301 Nucleotidyltransferase
10 5 4 0 SCOP 111369 HlyD-like secretion proteins
9 9 3 2 SCOP 53271 PRTase-like
9 9 4 3 SCOP 55120 Pseudouridine synthase
9 9 5 1 SCOP 55174 Alpha-L RNA-binding motif
9 9 3 0 SCOP 54523 Pili subunits
8 8 5 1 SCOP 53850 Periplasmic binding protein-like II
8 8 6 1 SCOP 54631 CBS-domain pair
8 8 2 4 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
8 3 3 0 SCOP 53738 Phosphoglucomutase, first 3 domains
7 7 4 1 SCOP 52317 Class I glutamine amidotransferase-like
7 7 1 4 SCOP 51366 Ribulose-phoshate binding barrel
7 6 5 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
7 7 4 4 SCOP 51161 Trimeric LpxA-like enzymes
7 7 4 0 SCOP 46689 Homeodomain-like
7 5 5 0 SCOP 50156 PDZ domain-like
7 6 3 1 SCOP 52440 PreATP-grasp domain
7 5 5 0 SCOP 116726 TrkA C-terminal domain-like
7 7 3 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 2 2 SCOP 56770 HydA/Nqo6-like
6 6 2 2 SCOP 52096 ClpP/crotonase
6 6 1 1 SCOP 56935 Porins
6 6 5 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
6 6 4 0 SCOP 50182 Sm-like ribonucleoproteins
6 6 4 0 SCOP 54001 Cysteine proteinases
6 6 5 2 SCOP 88713 Glycoside hydrolase/deacetylase
6 6 3 0 SCOP 141868 EAL domain-like
6 6 2 2 SCOP 56762 HydB/Nqo4-like
6 6 4 1 SCOP 53955 Lysozyme-like
6 6 4 0 SCOP 46548 alpha-helical ferredoxin
6 4 2 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
6 6 5 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 4 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
6 2 1 0 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
5 5 5 2 SCOP 51556 Metallo-dependent hydrolases
5 5 2 1 SCOP 161098 MetI-like
5 5 3 2 SCOP 53927 Cytidine deaminase-like
5 5 2 2 SCOP 53613 Ribokinase-like
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 2 2 SCOP 56300 Metallo-dependent phosphatases
5 5 3 1 SCOP 75217 alpha/beta knot
5 5 2 1 SCOP 48150 DNA-glycosylase
5 5 4 3 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
5 5 4 1 SCOP 51395 FMN-linked oxidoreductases
5 5 3 2 SCOP 53187 Zn-dependent exopeptidases
5 5 1 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
5 5 2 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
5 5 5 1 SCOP 88697 PUA domain-like
5 3 3 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 4 2 0 SCOP 143430 TTP0101/SSO1404-like
5 5 1 0 SCOP 103196 Roadblock/LC7 domain
5 5 5 1 SCOP 47781 RuvA domain 2-like
5 5 3 1 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 4 3 0 SCOP 54106 LysM domain
5 5 3 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
5 5 3 0 SCOP 52922 TK C-terminal domain-like
5 4 3 1 SCOP 52210 Succinyl-CoA synthetase domains
5 5 3 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
4 4 3 3 SCOP 53697 SIS domain
4 4 2 0 SCOP 56784 HAD-like
4 3 2 1 SCOP 54197 HIT-like
4 4 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
4 4 2 1 SCOP 47240 Ferritin-like
4 4 2 1 SCOP 53098 Ribonuclease H-like
4 4 2 0 SCOP 52980 Restriction endonuclease-like
4 4 3 2 SCOP 53633 Carbamate kinase-like
4 4 4 0 SCOP 51261 Duplicated hybrid motif
4 4 3 0 SCOP 54292 2Fe-2S ferredoxin-like
4 4 2 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
4 3 2 0 SCOP 117143 Flagellar hook protein flgE
4 4 3 1 SCOP 51419 PLP-binding barrel
4 4 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
4 3 3 1 SCOP 57783 Zinc beta-ribbon
4 4 4 1 SCOP 51230 Single hybrid motif
4 2 2 0 SCOP 81901 HCP-like
4 4 4 0 SCOP 89550 PHP domain-like
4 4 3 2 SCOP 50692 ADC-like
4 4 1 0 SCOP 56954 Outer membrane efflux proteins (OEP)
4 4 2 1 SCOP 81340 Clc chloride channel
4 4 3 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 2 1 0 SCOP 63411 LuxS/MPP-like metallohydrolase
4 3 3 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 3 3 1 SCOP 56024 Phospholipase D/nuclease
4 4 3 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
4 4 3 0 SCOP 56176 FAD-binding/transporter-associated domain-like
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
4 3 2 0 SCOP 63380 Riboflavin synthase domain-like
4 4 3 0 SCOP 110997 Sporulation related repeat
4 2 1 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
3 3 1 1 SCOP 53167 Purine and uridine phosphorylases
3 3 2 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 2 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
3 3 3 1 SCOP 55821 YrdC/RibB
3 3 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
3 3 1 2 SCOP 53720 ALDH-like
3 3 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 1 1 SCOP 56655 Carbohydrate phosphatase
3 3 1 0 SCOP 64518 Phase 1 flagellin
3 3 2 0 SCOP 55315 L30e-like
3 2 2 2 SCOP 51726 UROD/MetE-like
3 3 3 1 SCOP 88723 PIN domain-like
3 3 3 1 SCOP 53328 Formyltransferase
3 3 3 0 SCOP 54534 FKBP-like
3 3 3 0 SCOP 51445 (Trans)glycosidases
3 3 2 0 SCOP 56317 Carbon-nitrogen hydrolase
3 3 2 1 SCOP 51182 RmlC-like cupins
3 3 2 0 SCOP 51126 Pectin lyase-like
3 3 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 3 3 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 3 0 SCOP 52954 Class II aaRS ABD-related
3 3 1 0 SCOP 143243 Nqo5-like
3 3 3 1 SCOP 51717 Dihydropteroate synthetase-like
3 3 3 1 SCOP 56601 beta-lactamase/transpeptidase-like
3 3 2 0 SCOP 46955 Putative DNA-binding domain
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 50341 CheW-like
3 3 3 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
3 3 1 0 SCOP 56349 DNA breaking-rejoining enzymes
3 3 2 0 SCOP 51206 cAMP-binding domain-like
3 3 1 1 SCOP 54913 GlnB-like
3 3 2 1 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
3 3 2 0 SCOP 103088 OmpA-like
3 3 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
3 2 2 0 SCOP 101386 all-alpha NTP pyrophosphatases
3 3 2 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
3 2 2 2 SCOP 53901 Thiolase-like
3 3 2 0 SCOP 53146 Nitrogenase accessory factor-like
3 3 1 0 SCOP 141371 PilZ domain-like
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 3 2 0 SCOP 46589 tRNA-binding arm
3 1 1 0 SCOP 55979 DNA clamp
3 3 3 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 3 1 1 SCOP 51246 Rudiment single hybrid motif
3 2 2 1 SCOP 56719 Type II DNA topoisomerase
3 3 2 1 SCOP 50621 Alanine racemase C-terminal domain-like
3 3 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
3 3 1 1 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 1 1 0 SCOP 49299 PKD domain
3 3 3 0 SCOP 54768 dsRNA-binding domain-like
3 3 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 3 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
3 3 3 1 SCOP 81271 TGS-like
3 2 2 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 53474 alpha/beta-Hydrolases
2 2 2 0 SCOP 48013 NusB-like
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 56112 Protein kinase-like (PK-like)
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 0 SCOP 64182 DHH phosphoesterases
2 2 2 1 SCOP 53597 Dihydrofolate reductase-like
2 2 2 0 SCOP 52218 Flavoproteins
2 2 1 1 SCOP 51658 Xylose isomerase-like
2 2 1 2 SCOP 100950 NagB/RpiA/CoA transferase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 1 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
2 2 1 0 SCOP 53254 Phosphoglycerate mutase-like
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 1 SCOP 48576 Terpenoid synthases
2 2 2 0 SCOP 75169 DsrEFH-like
2 2 2 1 SCOP 52949 Macro domain-like
2 2 2 1 SCOP 50475 FMN-binding split barrel
2 2 1 1 SCOP 56801 Acetyl-CoA synthetase-like
2 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
2 2 1 0 SCOP 46579 Prefoldin
2 1 1 1 SCOP 46626 Cytochrome c
2 2 1 1 SCOP 56322 ADC synthase
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 2 0 SCOP 57997 Tropomyosin
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 2 SCOP 52972 ITPase-like
2 1 1 1 SCOP 48113 Heme-dependent peroxidases
2 2 1 0 SCOP 53056 beta-carbonic anhydrase, cab
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 1 2 SCOP 52768 Arginase/deacetylase
2 2 2 0 SCOP 81342 Transmembrane di-heme cytochromes
2 2 1 1 SCOP 111038 YjbQ-like
2 2 2 0 SCOP 102405 MCP/YpsA-like
2 2 1 1 SCOP 51998 PFL-like glycyl radical enzymes
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 2 0 SCOP 47413 lambda repressor-like DNA-binding domains
2 2 1 0 SCOP 53807 "Helical backbone" metal receptor
2 2 2 0 SCOP 160246 EspE N-terminal domain-like
2 2 1 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 2 2 SCOP 52467 DHS-like NAD/FAD-binding domain
2 2 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 2 2 0 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 2 1 SCOP 89095 GatB/YqeY motif
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 1 0 SCOP 57802 Rubredoxin-like
2 2 2 0 SCOP 55785 PYP-like sensor domain (PAS domain)
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 2 0 SCOP 101801 Surface presentation of antigens (SPOA)
2 2 1 0 SCOP 74653 TolA/TonB C-terminal domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 1 0 SCOP 63867 MoeA C-terminal domain-like
2 2 1 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
2 2 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
2 2 2 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 0 SCOP 101898 NHL repeat
2 2 2 0 SCOP 81923 Double Clp-N motif
2 2 1 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
2 2 2 0 SCOP 160544 EscU C-terminal domain-like
2 2 2 0 SCOP 48019 post-AAA+ oligomerization domain-like
2 2 2 1 SCOP 52009 Phosphohistidine domain
2 2 1 0 SCOP 51971 Nucleotide-binding domain
2 1 1 1 SCOP 53681 Aspartate/glutamate racemase
2 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
2 1 1 1 SCOP 48029 FliG
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 1 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 0 SCOP 142984 Nqo1 middle domain-like
2 2 2 0 SCOP 81585 PsbU/PolX domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 1 SCOP 81891 Poly A polymerase C-terminal region-like
2 2 2 0 SCOP 68912 Rho N-terminal domain-like
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 2 1 1 SCOP 51984 MurCD N-terminal domain
2 2 1 1 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 141259 CarD-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 46946 S13-like H2TH domain
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 0 SCOP 47336 ACP-like
1 1 1 0 SCOP 103473 MFS general substrate transporter
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 1 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 50129 GroES-like
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
1 1 1 1 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 0 SCOP 51316 Mss4-like
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 0 SCOP 54285 MoaD/ThiS
1 1 1 1 SCOP 142695 RibA-like
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 55229 Cell division protein MinE topological specificity domain
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 1 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 1 SCOP 47113 Histone-fold
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 0 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 1 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 54427 NTF2-like
1 1 1 1 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 1 SCOP 48403 Ankyrin repeat
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 74650 Galactose mutarotase-like
1 1 1 0 SCOP 53639 AraD/HMP-PK domain-like
1 1 1 0 SCOP 48208 Six-hairpin glycosidases
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 46458 Globin-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 0 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 0 SCOP 49478 Cna protein B-type domain
1 1 1 1 SCOP 51069 Carbonic anhydrase
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 47598 Ribbon-helix-helix
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82771 GIY-YIG endonuclease
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 1 SCOP 64167 SurE-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 140663 TTHA0068-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 1 SCOP 56219 DNase I-like
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 1 SCOP 117396 TM1631-like
1 1 1 0 SCOP 141694 AF2212/PG0164-like
1 1 1 0 SCOP 103084 Holliday junction resolvase RusA
1 1 1 0 SCOP 158997 Trm112p-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 144052 Thermophilic metalloprotease-like
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 55826 YbaK/ProRS associated domain
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 160537 SpoVG-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 143631 ApbE-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 158622 YheA/YmcA-like
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 0 SCOP 69322 Tricorn protease domain 2
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 111384 OmpH-like
1 1 1 1 SCOP 161070 SNF-like
1 1 1 0 SCOP 101116 Flagellar export chaperone FliS
1 1 1 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 1 SCOP 53163 HybD-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 101498 Anti-sigma factor FlgM
1 1 1 0 SCOP 103039 CheC-like
1 1 1 0 SCOP 103007 Hypothetical protein TT1725
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 75708 Chemotaxis phosphatase CheZ
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 160980 SSO1389-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52743 Subtilisin-like
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 90123 ABC transporter transmembrane region
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
1 1 1 0 SCOP 160214 FlaG-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
1 1 1 0 SCOP 47188 Hemerythrin-like
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 63848 Cell-division inhibitor MinC, C-terminal domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 109635 DnaK suppressor protein DksA, alpha-hairpin domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 0 SCOP 158472 HAMP domain-like
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 117074 Hypothetical protein PA1324
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 82004 N-utilization substance G protein NusG, insert domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 158544 GspK insert domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 143724 PHP14-like
1 1 1 0 SCOP 57414 Hairpin loop containing domain-like
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 1 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 140356 PPK N-terminal domain-like
1 1 1 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 1 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 82829 MesJ substrate recognition domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Troponin coil-coiled subunits
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily FYSH domain
SCOP superfamily GAT-like domain
SCOP superfamily Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Fumarate reductase respiratory complex transmembrane subunits
SCOP superfamily Aquaporin-like
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Cullin repeat-like
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Integrin alpha N-terminal domain
SCOP superfamily Hypothetical protein MTH865
SCOP superfamily Protein-L-isoaspartyl O-methyltransferase, C-terminal domain
SCOP superfamily Intermediate filament protein, coiled coil region
SCOP superfamily YWTD domain
SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain
SCOP superfamily BAG domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Oligomerization domain of hepatitis delta antigen
SCOP superfamily Bacterial hemolysins
SCOP superfamily SNARE fusion complex
SCOP superfamily XRCC4, C-terminal oligomerization domain
SCOP superfamily Major capsid protein gp5
SCOP superfamily Conserved core of transcriptional regulatory protein vp16
SCOP superfamily ADP-ribosylation
SCOP superfamily Ribonuclease Rh-like
SCOP superfamily Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
SCOP superfamily Periplasmic binding protein-like I
SCOP superfamily vWA-like
SCOP superfamily LigB-like
SCOP superfamily NAD(P)-linked oxidoreductase
SCOP superfamily Hedgehog/intein (Hint) domain
SCOP superfamily Carboxypeptidase regulatory domain-like
SCOP superfamily Starch-binding domain-like
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Fibronectin type III
SCOP superfamily ARM repeat
SCOP superfamily Conserved domain common to transcription factors TFIIS, elongin A, CRSP70
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily Apolipoprotein
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Spectrin repeat
SCOP superfamily CRAL/TRIO N-terminal domain
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily Photosystem II antenna protein-like
SCOP superfamily Photosystem II reaction center protein M, PsbM
SCOP superfamily AF1531-like
SCOP superfamily BT0923-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily BLRF2-like
SCOP superfamily YdhG-like
SCOP superfamily XCC0632-like
SCOP superfamily Lipase chaperone-like
SCOP superfamily MgtE N-terminal domain-like
SCOP superfamily HP0242-like
SCOP superfamily MtlR-like
SCOP superfamily AF1862-like
SCOP superfamily PRP4-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily Oxysterol-binding protein-like
SCOP superfamily CcmK-like
SCOP superfamily RelE-like
SCOP superfamily Acetamidase/Formamidase-like
SCOP superfamily IpaD-like
SCOP superfamily YoaC-like
SCOP superfamily FlgN-like
SCOP superfamily BAS1536-like
SCOP superfamily DNA primase DnaG, C-terminal domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily XseB-like
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily Ligand-binding domain in the NO signalling and Golgi transport
SCOP superfamily BAR/IMD domain-like
SCOP superfamily Mitochondrial carrier
SCOP superfamily MoaD-related protein, C-terminal domain
SCOP superfamily Sensory domain-like
SCOP superfamily General secretion pathway protein M, EpsM
SCOP superfamily Putative dsDNA mimic
SCOP superfamily JAB1/MPN domain
SCOP superfamily Rof/RNase P subunit-like

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