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Pyrococcus sp. NA2 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus sp. NA2

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1979 total
1341 (68 %) with assignment
287 average length
64 % amino acid coverage
Domains: 1817 total
521 unique superfamilies
389 unique families
270 average length
3.5 average superfamily size
71 % formed by duplication
Domain combinations: 265 domain pairs
679 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

178 164 47 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
76 74 20 6 SCOP 46785 "Winged helix" DNA-binding domain
40 38 9 14 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
38 38 11 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
30 28 19 4 SCOP 50249 Nucleic acid-binding proteins
30 30 7 0 SCOP 102114 Radical SAM enzymes
23 23 4 1 SCOP 53448 Nucleotide-diphospho-sugar transferases
22 22 2 4 SCOP 53383 PLP-dependent transferases
22 21 9 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
17 17 12 3 SCOP 52374 Nucleotidylyl transferase
16 13 5 2 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
16 16 12 4 SCOP 55681 Class II aaRS and biotin synthetases
16 16 4 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
15 15 2 1 SCOP 161098 MetI-like
15 14 8 1 SCOP 51905 FAD/NAD(P)-binding domain
15 15 10 5 SCOP 88697 PUA domain-like
14 14 4 4 SCOP 56784 HAD-like
14 14 8 5 SCOP 54211 Ribosomal protein S5 domain 2-like
14 14 6 1 SCOP 54862 4Fe-4S ferredoxins
14 14 2 1 SCOP 54909 Dimeric alpha+beta barrel
14 11 11 0 SCOP 51294 Hedgehog/intein (Hint) domain
13 13 1 0 SCOP 103473 MFS general substrate transporter
13 13 6 1 SCOP 88723 PIN domain-like
13 9 9 0 SCOP 55608 Homing endonucleases
12 11 4 3 SCOP 56300 Metallo-dependent phosphatases
12 12 4 1 SCOP 47240 Ferritin-like
12 10 3 1 SCOP 53850 Periplasmic binding protein-like II
12 6 2 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
11 10 5 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
11 11 2 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
11 11 8 5 SCOP 50447 Translation proteins
10 10 5 5 SCOP 51556 Metallo-dependent hydrolases
10 8 5 1 SCOP 54631 CBS-domain pair
10 5 1 1 SCOP 52210 Succinyl-CoA synthetase domains
9 9 5 2 SCOP 52317 Class I glutamine amidotransferase-like
9 9 4 1 SCOP 53187 Zn-dependent exopeptidases
9 9 6 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
9 8 7 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
8 8 4 4 SCOP 53613 Ribokinase-like
8 8 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
8 8 4 3 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
8 8 3 1 SCOP 81301 Nucleotidyltransferase
8 7 3 2 SCOP 52440 PreATP-grasp domain
8 8 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
8 3 2 1 SCOP 53738 Phosphoglucomutase, first 3 domains
7 7 3 3 SCOP 51366 Ribulose-phoshate binding barrel
7 7 4 2 SCOP 52980 Restriction endonuclease-like
7 6 3 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
7 7 7 0 SCOP 47413 lambda repressor-like DNA-binding domains
7 6 6 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
7 7 3 0 SCOP 52922 TK C-terminal domain-like
7 6 3 0 SCOP 63380 Riboflavin synthase domain-like
6 6 3 1 SCOP 53474 alpha/beta-Hydrolases
6 6 4 3 SCOP 51569 Aldolase
6 6 4 1 SCOP 53271 PRTase-like
6 6 1 0 SCOP 57829 Zn-binding ribosomal proteins
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 3 1 SCOP 109755 PhoU-like
6 6 2 2 SCOP 53633 Carbamate kinase-like
6 6 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
6 5 3 0 SCOP 48452 TPR-like
6 6 2 1 SCOP 53649 Alkaline phosphatase-like
6 5 4 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
6 6 4 1 SCOP 143437 THUMP domain-like
6 6 2 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 4 2 1 SCOP 53681 Aspartate/glutamate racemase
6 5 2 1 SCOP 56042 PurM C-terminal domain-like
6 5 2 1 SCOP 55326 PurM N-terminal domain-like
5 5 4 0 SCOP 64182 DHH phosphoesterases
5 4 3 0 SCOP 89447 AbrB/MazE/MraZ-like
5 5 3 4 SCOP 75217 alpha/beta knot
5 4 3 1 SCOP 52096 ClpP/crotonase
5 5 3 1 SCOP 109604 HD-domain/PDEase-like
5 4 3 0 SCOP 54001 Cysteine proteinases
5 5 3 2 SCOP 88713 Glycoside hydrolase/deacetylase
5 4 3 0 SCOP 55008 HMA, heavy metal-associated domain
5 5 5 1 SCOP 52954 Class II aaRS ABD-related
5 5 3 1 SCOP 52016 LeuD/IlvD-like
5 5 1 1 SCOP 53807 "Helical backbone" metal receptor
5 5 3 0 SCOP 50692 ADC-like
5 5 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
5 5 2 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
5 5 3 1 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
4 4 2 0 SCOP 56112 Protein kinase-like (PK-like)
4 3 3 2 SCOP 52833 Thioredoxin-like
4 4 4 1 SCOP 53137 Translational machinery components
4 4 4 2 SCOP 55120 Pseudouridine synthase
4 4 2 0 SCOP 53067 Actin-like ATPase domain
4 4 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
4 4 2 1 SCOP 51161 Trimeric LpxA-like enzymes
4 4 1 0 SCOP 56770 HydA/Nqo6-like
4 4 4 2 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
4 4 1 1 SCOP 54285 MoaD/ThiS
4 4 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
4 4 2 0 SCOP 48371 ARM repeat
4 4 3 1 SCOP 55315 L30e-like
4 4 2 0 SCOP 55469 FMN-dependent nitroreductase-like
4 2 2 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
4 4 2 1 SCOP 51182 RmlC-like cupins
4 4 1 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
4 4 1 0 SCOP 101960 Stabilizer of iron transporter SufD
4 3 2 0 SCOP 46955 Putative DNA-binding domain
4 4 2 0 SCOP 47598 Ribbon-helix-helix
4 3 3 0 SCOP 57783 Zinc beta-ribbon
4 4 1 1 SCOP 56762 HydB/Nqo4-like
4 4 4 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
4 4 1 0 SCOP 144052 Thermophilic metalloprotease-like
4 4 2 1 SCOP 55021 ACT-like
4 2 1 0 SCOP 53901 Thiolase-like
4 4 2 0 SCOP 53146 Nitrogenase accessory factor-like
4 4 4 1 SCOP 55186 ThrRS/AlaRS common domain
4 4 3 0 SCOP 46548 alpha-helical ferredoxin
4 3 2 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
4 4 3 1 SCOP 116726 TrkA C-terminal domain-like
4 4 1 1 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
4 4 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
4 4 1 1 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
4 4 1 1 SCOP 101821 Aminopeptidase/glucanase lid domain
3 3 1 2 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 1 SCOP 55920 Creatinase/aminopeptidase
3 3 1 0 SCOP 51658 Xylose isomerase-like
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 3 1 0 SCOP 82784 OsmC-like
3 3 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
3 3 3 2 SCOP 55821 YrdC/RibB
3 3 2 1 SCOP 48150 DNA-glycosylase
3 3 1 1 SCOP 51395 FMN-linked oxidoreductases
3 3 1 2 SCOP 56796 Dehydroquinate synthase-like
3 3 2 1 SCOP 50182 Sm-like ribonucleoproteins
3 3 2 0 SCOP 50475 FMN-binding split barrel
3 3 2 0 SCOP 46579 Prefoldin
3 3 3 1 SCOP 53639 AraD/HMP-PK domain-like
3 3 1 2 SCOP 52768 Arginase/deacetylase
3 2 2 0 SCOP 51998 PFL-like glycyl radical enzymes
3 3 2 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
3 3 2 1 SCOP 89550 PHP domain-like
3 3 3 2 SCOP 52467 DHS-like NAD/FAD-binding domain
3 3 2 1 SCOP 53732 Aconitase iron-sulfur domain
3 3 3 0 SCOP 57802 Rubredoxin-like
3 2 2 0 SCOP 117070 LEA14-like
3 3 1 1 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
3 3 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
3 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 3 2 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 1 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
3 2 2 0 SCOP 51971 Nucleotide-binding domain
3 3 3 0 SCOP 81665 Calcium ATPase, transmembrane domain M
3 3 2 1 SCOP 55307 Tubulin C-terminal domain-like
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
3 3 3 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 2 0 SCOP 54585 Cdc48 domain 2-like
2 2 1 1 SCOP 53167 Purine and uridine phosphorylases
2 2 2 1 SCOP 53927 Cytidine deaminase-like
2 2 2 2 SCOP 52141 Uracil-DNA glycosylase-like
2 2 2 2 SCOP 53697 SIS domain
2 2 2 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
2 2 1 0 SCOP 54197 HIT-like
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 2 0 SCOP 110324 Ribosomal L27 protein-like
2 2 2 2 SCOP 53098 Ribonuclease H-like
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 0 SCOP 82649 SufE/NifU
2 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 1 2 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 55298 YjgF-like
2 2 1 0 SCOP 47113 Histone-fold
2 2 1 1 SCOP 48613 Heme oxygenase-like
2 2 1 1 SCOP 51726 UROD/MetE-like
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 1 0 SCOP 111278 SSo0622-like
2 2 1 1 SCOP 63393 RNA polymerase subunits
2 2 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 2 2 1 SCOP 53774 Glutaminase/Asparaginase
2 2 1 1 SCOP 56317 Carbon-nitrogen hydrolase
2 2 2 0 SCOP 51306 LexA/Signal peptidase
2 2 1 2 SCOP 52972 ITPase-like
2 2 1 0 SCOP 48208 Six-hairpin glycosidases
2 2 1 1 SCOP 110849 ParB/Sulfiredoxin
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 1 SCOP 52172 CheY-like
2 2 1 1 SCOP 111038 YjbQ-like
2 2 1 0 SCOP 143243 Nqo5-like
2 2 1 1 SCOP 102712 JAB1/MPN domain
2 2 2 1 SCOP 50341 CheW-like
2 2 2 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
2 2 2 1 SCOP 51230 Single hybrid motif
2 2 2 1 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 53300 vWA-like
2 2 1 1 SCOP 55154 CYTH-like phosphatases
2 2 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
2 2 1 1 SCOP 54913 GlnB-like
2 2 1 0 SCOP 53822 Periplasmic binding protein-like I
2 1 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 1 0 SCOP 141694 AF2212/PG0164-like
2 2 2 1 SCOP 54975 Acylphosphatase/BLUF domain-like
2 2 1 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
2 2 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 0 SCOP 159234 FomD-like
2 2 2 0 SCOP 50037 C-terminal domain of transcriptional repressors
2 2 1 1 SCOP 161070 SNF-like
2 2 2 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
2 2 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
2 2 1 0 SCOP 53041 Resolvase-like
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 1 1 SCOP 141130 Acetamidase/Formamidase-like
2 2 1 0 SCOP 53163 HybD-like
2 2 1 0 SCOP 50331 MOP-like
2 2 1 1 SCOP 51604 Enolase C-terminal domain-like
2 2 1 1 SCOP 103039 CheC-like
2 2 1 0 SCOP 82171 DPP6 N-terminal domain-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 1 1 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 2 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
2 2 1 1 SCOP 90123 ABC transporter transmembrane region
2 1 1 1 SCOP 55979 DNA clamp
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 1 0 SCOP 51246 Rudiment single hybrid motif
2 2 1 0 SCOP 160991 CV3147-like
2 2 1 0 SCOP 49464 Carboxypeptidase regulatory domain-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 1 1 0 SCOP 161093 MgtE membrane domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 54826 Enolase N-terminal domain-like
2 2 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 1 SCOP 141322 NfeD domain-like
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 2 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 2 2 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
2 1 1 1 SCOP 55945 TATA-box binding protein-like
2 2 1 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 1 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 1 SCOP 111057 Hypothetical protein PF0899
2 2 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 2 1 SCOP 81271 TGS-like
2 2 2 2 SCOP 55261 GAD domain-like
2 2 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 1 SCOP 88802 Pre-PUA domain
2 1 1 0 SCOP 55052 CheY-binding domain of CheA
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 1 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 52218 Flavoproteins
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 50129 GroES-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 51283 dUTPase-like
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 0 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 142695 RibA-like
1 1 1 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
1 1 1 1 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 0 SCOP 82657 BolA-like
1 1 1 0 SCOP 46689 Homeodomain-like
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 1 SCOP 52949 Macro domain-like
1 1 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 56801 Acetyl-CoA synthetase-like
1 1 1 1 SCOP 56672 DNA/RNA polymerases
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
1 1 1 0 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
1 1 1 1 SCOP 54534 FKBP-like
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 1 SCOP 52499 Isochorismatase-like hydrolases
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 55144 LigT-like
1 1 1 1 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 0 SCOP 54897 Protease propeptides/inhibitors
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
1 1 1 0 SCOP 49777 PEBP-like
1 1 1 0 SCOP 103486 V-type ATP synthase subunit C
1 1 1 1 SCOP 143870 PF0523-like
1 1 1 0 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 56529 FAH
1 1 1 1 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 1 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 144091 Rhomboid-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 1 SCOP 102405 MCP/YpsA-like
1 1 1 0 SCOP 81324 Voltage-gated potassium channels
1 1 1 0 SCOP 143422 Transposase IS200-like
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 0 SCOP 56601 beta-lactamase/transpeptidase-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 0 SCOP 50494 Trypsin-like serine proteases
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 75712 Rad50 coiled-coil Zn hook
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 1 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 1 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 1 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 69796 Thymidylate synthase-complementing protein Thy1
1 1 1 0 SCOP 50993 Peptidase/esterase 'gauge' domain
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 1 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
1 1 1 0 SCOP 117396 TM1631-like
1 1 1 1 SCOP 82544 GckA/TtuD-like
1 1 1 0 SCOP 53213 LigB-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 89028 Cobalamin adenosyltransferase-like
1 1 1 0 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 101307 YutG-like
1 1 1 1 SCOP 118215 Proton glutamate symport protein
1 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 1 SCOP 56821 Prismane protein-like
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 1 SCOP 143430 TTP0101/SSO1404-like
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 1 SCOP 53182 Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase)
1 1 1 0 SCOP 69786 YggU-like
1 1 1 1 SCOP 64076 MTH938-like
1 1 1 1 SCOP 159127 HupF/HypC-like
1 1 1 0 SCOP 103247 TT1751-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 1 SCOP 52738 Methylesterase CheB, C-terminal domain
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 63992 Dipeptide transport protein
1 1 1 0 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 0 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 1 SCOP 160350 Rnp2-like
1 1 1 1 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 0 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 0 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 103165 Ta1353-like
1 1 1 1 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 52743 Subtilisin-like
1 1 1 0 SCOP 46589 tRNA-binding arm
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 50729 PH domain-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 63825 YWTD domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 0 SCOP 117281 Kelch motif
1 1 1 1 SCOP 142913 YktB/PF0168-like
1 1 1 0 SCOP 143555 FwdE-like
1 1 1 0 SCOP 103190 Sensory domain-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 1 SCOP 160945 PH0156-like
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 68923 PEP carboxykinase N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 0 SCOP 81585 PsbU/PolX domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 160148 CPE0013-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63446 Type I dockerin domain
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 110783 Hypothetical protein MTH677
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 0 SCOP 53743 FucI/AraA N-terminal and middle domains
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 101576 Supernatant protein factor (SPF), C-terminal domain
1 1 1 1 SCOP 159902 PH1570-like
1 1 1 1 SCOP 159612 TBP-interacting protein-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 0 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 1 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 1 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 1 SCOP 160467 PH0987 N-terminal domain-like
1 1 1 1 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 0 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 1 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 140914 PriB N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 0 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 159071 TrmB C-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily Photosystem I reaction center subunit XI, PsaL
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Transmembrane di-heme cytochromes
SCOP superfamily E set domains
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily C-terminal domain of PLC-beta
SCOP superfamily Ribosome binding protein Y (YfiA homologue)
SCOP superfamily Arp2/3 complex subunits
SCOP superfamily Phage fibre proteins
SCOP superfamily RecG, N-terminal domain
SCOP superfamily Ganglioside M2 (gm2) activator
SCOP superfamily Leucine zipper domain
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily RING/U-box
SCOP superfamily beta-beta-alpha zinc fingers
SCOP superfamily FnI-like domain
SCOP superfamily Aerolisin/ETX pore-forming domain
SCOP superfamily OMPA-like
SCOP superfamily Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment
SCOP superfamily Type II DNA topoisomerase
SCOP superfamily Nitrile hydratase alpha chain
SCOP superfamily Phospholipase D/nuclease
SCOP superfamily Nitrite and sulphite reductase 4Fe-4S domain-like
SCOP superfamily S-adenosylmethionine synthetase
SCOP superfamily Anticodon-binding domain of PheRS
SCOP superfamily (Trans)glycosidases
SCOP superfamily Pectin lyase-like
SCOP superfamily Mannose-binding lectins
SCOP superfamily Carbohydrate binding domain
SCOP superfamily RCC1/BLIP-II
SCOP superfamily YVTN repeat-like/Quinoprotein amine dehydrogenase
SCOP superfamily FucI/AraA C-terminal domain-like
SCOP superfamily Cna protein B-type domain
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Invasin/intimin cell-adhesion fragments
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Fibronectin type III
SCOP superfamily Multiheme cytochromes
SCOP superfamily GST C-terminal domain-like
SCOP superfamily SWIB/MDM2 domain
SCOP superfamily EF-hand
SCOP superfamily Bromodomain
SCOP superfamily Retrovirus capsid dimerization domain-like
SCOP superfamily Spectrin repeat
SCOP superfamily HR1 repeat
SCOP superfamily Globin-like
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily Cytochrome b559 subunits
SCOP superfamily SSO1389-like
SCOP superfamily SMI1/KNR4-like
SCOP superfamily BT0923-like
SCOP superfamily YonK-like
SCOP superfamily NMB0513-like
SCOP superfamily EspE N-terminal domain-like
SCOP superfamily Plus3-like
SCOP superfamily Trm112p-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily HAMP domain-like
SCOP superfamily TM1646-like
SCOP superfamily occludin/ELL-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily Heme iron utilization protein-like
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily PHP14-like
SCOP superfamily CcmK-like
SCOP superfamily LemA-like
SCOP superfamily Hypothetical protein YqbG
SCOP superfamily MIT domain
SCOP superfamily Ammonium transporter
SCOP superfamily Recombination protein RecR
SCOP superfamily VPS9 domain
SCOP superfamily Phenylalanine zipper
SCOP superfamily Bacteriocin immunity protein-like
SCOP superfamily Trigger factor ribosome-binding domain
SCOP superfamily Alpha-2,3/8-sialyltransferase CstII
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily NHL repeat
SCOP superfamily ASF1-like
SCOP superfamily C-terminal domain of Ku80

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