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Methanocaldococcus jannaschii DSM 2661 superfamily assignments

Taxonomy
Taxonomy browser entry

Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus; Methanocaldococcus jannaschii; Methanocaldococcus jannaschii DSM 2661

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 1771 total
1177 (66 %) with assignment
284 average length
62 % amino acid coverage
Domains: 1614 total
499 unique superfamilies
322 unique families
264 average length
3.2 average superfamily size
69 % formed by duplication
Domain combinations: 267 domain pairs
646 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

154 141 38 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
43 42 9 11 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
41 40 20 2 SCOP 46785 "Winged helix" DNA-binding domain
40 32 15 0 SCOP 54862 4Fe-4S ferredoxins
31 31 5 1 SCOP 102114 Radical SAM enzymes
29 29 20 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
27 22 15 2 SCOP 50249 Nucleic acid-binding proteins
24 16 16 0 SCOP 55608 Homing endonucleases
20 20 8 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
20 15 15 0 SCOP 51294 Hedgehog/intein (Hint) domain
17 17 1 5 SCOP 53383 PLP-dependent transferases
17 15 8 1 SCOP 54631 CBS-domain pair
15 15 3 3 SCOP 56281 Metallo-hydrolase/oxidoreductase
14 13 9 4 SCOP 54211 Ribosomal protein S5 domain 2-like
14 12 10 1 SCOP 55021 ACT-like
13 13 10 3 SCOP 56059 Glutathione synthetase ATP-binding domain-like
13 13 8 2 SCOP 52374 Nucleotidylyl transferase
12 12 6 4 SCOP 51569 Aldolase
12 12 4 5 SCOP 51366 Ribulose-phoshate binding barrel
12 12 10 2 SCOP 55681 Class II aaRS and biotin synthetases
12 10 5 0 SCOP 48452 TPR-like
11 11 5 1 SCOP 52317 Class I glutamine amidotransferase-like
11 10 8 2 SCOP 50447 Translation proteins
11 11 2 1 SCOP 81301 Nucleotidyltransferase
10 10 4 1 SCOP 51905 FAD/NAD(P)-binding domain
10 8 3 3 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
10 10 2 2 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
10 10 4 1 SCOP 88723 PIN domain-like
10 10 7 2 SCOP 88697 PUA domain-like
9 9 4 3 SCOP 51556 Metallo-dependent hydrolases
9 9 2 0 SCOP 53448 Nucleotide-diphospho-sugar transferases
9 9 6 1 SCOP 53067 Actin-like ATPase domain
9 9 7 1 SCOP 53850 Periplasmic binding protein-like II
9 5 2 1 SCOP 116734 DNA methylase specificity domain
8 8 3 1 SCOP 56300 Metallo-dependent phosphatases
8 7 5 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
8 8 6 0 SCOP 47413 lambda repressor-like DNA-binding domains
8 7 3 1 SCOP 56042 PurM C-terminal domain-like
8 7 3 1 SCOP 55326 PurM N-terminal domain-like
7 7 2 1 SCOP 56784 HAD-like
7 7 2 1 SCOP 111126 Ligand-binding domain in the NO signalling and Golgi transport
7 4 4 0 SCOP 57783 Zinc beta-ribbon
7 7 6 0 SCOP 46548 alpha-helical ferredoxin
7 7 4 2 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
6 5 4 2 SCOP 53271 PRTase-like
6 6 1 1 SCOP 57829 Zn-binding ribosomal proteins
6 6 1 1 SCOP 53790 Tetrapyrrole methylase
6 6 4 2 SCOP 53613 Ribokinase-like
6 6 4 2 SCOP 50104 Translation proteins SH3-like domain
6 6 4 1 SCOP 64182 DHH phosphoesterases
6 6 2 0 SCOP 52218 Flavoproteins
6 6 1 0 SCOP 51658 Xylose isomerase-like
6 6 3 3 SCOP 53098 Ribonuclease H-like
6 4 3 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
6 6 2 0 SCOP 47113 Histone-fold
6 6 6 1 SCOP 52954 Class II aaRS ABD-related
6 6 4 3 SCOP 56821 Prismane protein-like
6 6 2 0 SCOP 103196 Roadblock/LC7 domain
6 6 5 2 SCOP 52440 PreATP-grasp domain
6 6 2 2 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
6 6 2 2 SCOP 55088 Methyl-coenzyme M reductase subunits
6 2 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
5 5 4 1 SCOP 55120 Pseudouridine synthase
5 5 3 3 SCOP 75217 alpha/beta knot
5 5 4 1 SCOP 52980 Restriction endonuclease-like
5 5 2 2 SCOP 53633 Carbamate kinase-like
5 5 1 0 SCOP 56770 HydA/Nqo6-like
5 5 2 1 SCOP 51395 FMN-linked oxidoreductases
5 5 2 1 SCOP 109604 HD-domain/PDEase-like
5 5 2 1 SCOP 47598 Ribbon-helix-helix
5 5 1 1 SCOP 53807 "Helical backbone" metal receptor
5 5 3 0 SCOP 89550 PHP domain-like
5 5 2 1 SCOP 54913 GlnB-like
5 5 4 2 SCOP 52467 DHS-like NAD/FAD-binding domain
5 4 3 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
5 5 2 0 SCOP 57802 Rubredoxin-like
5 5 3 1 SCOP 143437 THUMP domain-like
5 5 4 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
5 1 1 0 SCOP 49299 PKD domain
4 4 1 1 SCOP 161098 MetI-like
4 4 2 3 SCOP 53697 SIS domain
4 4 3 1 SCOP 53137 Translational machinery components
4 4 3 0 SCOP 48371 ARM repeat
4 4 3 0 SCOP 50182 Sm-like ribonucleoproteins
4 4 3 1 SCOP 55315 L30e-like
4 4 3 0 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
4 4 1 1 SCOP 46579 Prefoldin
4 4 3 0 SCOP 51717 Dihydropteroate synthetase-like
4 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
4 4 1 0 SCOP 143011 RelE-like
4 4 2 2 SCOP 52016 LeuD/IlvD-like
4 4 1 1 SCOP 56762 HydB/Nqo4-like
4 4 3 0 SCOP 54975 Acylphosphatase/BLUF domain-like
4 3 3 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
4 2 1 0 SCOP 53901 Thiolase-like
4 3 2 0 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
4 3 3 1 SCOP 52210 Succinyl-CoA synthetase domains
4 4 1 1 SCOP 48081 Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
3 3 3 0 SCOP 56112 Protein kinase-like (PK-like)
3 3 2 2 SCOP 52833 Thioredoxin-like
3 3 1 2 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
3 3 1 2 SCOP 55282 RL5-like
3 3 2 1 SCOP 47240 Ferritin-like
3 3 2 2 SCOP 100950 NagB/RpiA/CoA transferase-like
3 3 1 1 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
3 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
3 3 2 1 SCOP 109755 PhoU-like
3 3 2 1 SCOP 51161 Trimeric LpxA-like enzymes
3 3 2 2 SCOP 55821 YrdC/RibB
3 3 2 0 SCOP 48150 DNA-glycosylase
3 3 1 0 SCOP 52096 ClpP/crotonase
3 3 2 0 SCOP 75169 DsrEFH-like
3 3 2 1 SCOP 53187 Zn-dependent exopeptidases
3 3 2 0 SCOP 50475 FMN-binding split barrel
3 1 1 1 SCOP 56672 DNA/RNA polymerases
3 2 2 0 SCOP 49899 Concanavalin A-like lectins/glucanases
3 3 3 2 SCOP 55931 Glutamine synthetase/guanido kinase
3 3 2 0 SCOP 81324 Voltage-gated potassium channels
3 2 2 0 SCOP 46955 Putative DNA-binding domain
3 3 2 0 SCOP 53300 vWA-like
3 3 2 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
3 3 3 1 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 2 2 0 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
3 3 1 0 SCOP 53163 HybD-like
3 3 1 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
3 3 2 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
3 3 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
3 2 2 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
3 3 2 1 SCOP 51246 Rudiment single hybrid motif
3 2 2 0 SCOP 54980 EF-G C-terminal domain-like
3 3 1 0 SCOP 52922 TK C-terminal domain-like
3 3 3 1 SCOP 52935 PK C-terminal domain-like
3 3 2 0 SCOP 116726 TrkA C-terminal domain-like
3 3 1 2 SCOP 55060 GHMP Kinase, C-terminal domain
3 3 2 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
3 3 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
2 2 2 1 SCOP 55920 Creatinase/aminopeptidase
2 2 2 0 SCOP 46946 S13-like H2TH domain
2 2 1 0 SCOP 103473 MFS general substrate transporter
2 2 2 0 SCOP 55174 Alpha-L RNA-binding motif
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 1 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
2 2 1 1 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
2 2 1 2 SCOP 53720 ALDH-like
2 2 2 1 SCOP 51283 dUTPase-like
2 2 2 1 SCOP 51713 tRNA-guanine transglycosylase
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 2 1 SCOP 56655 Carbohydrate phosphatase
2 2 2 2 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 2 0 SCOP 46689 Homeodomain-like
2 2 2 0 SCOP 64307 SirA-like
2 2 1 0 SCOP 52121 Lumazine synthase
2 2 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
2 2 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
2 2 2 1 SCOP 54534 FKBP-like
2 2 1 0 SCOP 53649 Alkaline phosphatase-like
2 2 2 0 SCOP 54001 Cysteine proteinases
2 2 2 1 SCOP 51445 (Trans)glycosidases
2 1 1 0 SCOP 54506 Diaminopimelate epimerase-like
2 2 1 1 SCOP 51182 RmlC-like cupins
2 2 2 1 SCOP 53639 AraD/HMP-PK domain-like
2 2 2 1 SCOP 52972 ITPase-like
2 1 1 0 SCOP 51126 Pectin lyase-like
2 2 2 0 SCOP 48208 Six-hairpin glycosidases
2 2 2 0 SCOP 88713 Glycoside hydrolase/deacetylase
2 2 2 0 SCOP 55257 RBP11-like subunits of RNA polymerase
2 2 1 2 SCOP 52768 Arginase/deacetylase
2 2 2 1 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 1 SCOP 54909 Dimeric alpha+beta barrel
2 2 2 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
2 2 1 1 SCOP 111352 Ammonium transporter
2 2 2 0 SCOP 58100 Bacterial hemolysins
2 2 2 0 SCOP 75712 Rad50 coiled-coil Zn hook
2 2 2 0 SCOP 56349 DNA breaking-rejoining enzymes
2 2 2 0 SCOP 50692 ADC-like
2 2 1 0 SCOP 117782 YbjQ-like
2 2 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 1 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 1 SCOP 103365 Hypothetical protein PH1602
2 2 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 2 1 0 SCOP 141694 AF2212/PG0164-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 2 1 0 SCOP 56747 Prim-pol domain
2 2 1 0 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
2 2 1 1 SCOP 144010 CofE-like
2 2 1 0 SCOP 159659 Cgl1923-like
2 2 2 0 SCOP 117070 LEA14-like
2 2 1 0 SCOP 53146 Nitrogenase accessory factor-like
2 2 2 0 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
2 2 1 0 SCOP 50346 PRC-barrel domain
2 2 1 0 SCOP 160980 SSO1389-like
2 2 2 1 SCOP 52490 Tubulin nucleotide-binding domain-like
2 2 2 0 SCOP 63867 MoeA C-terminal domain-like
2 1 1 0 SCOP 55979 DNA clamp
2 2 2 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 1 0 SCOP 140371 Vng1086c-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 2 1 SCOP 55307 Tubulin C-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 1 1 1 SCOP 50621 Alanine racemase C-terminal domain-like
2 1 1 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 2 1 SCOP 54826 Enolase N-terminal domain-like
2 2 2 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
2 1 1 1 SCOP 47954 Cyclin-like
2 2 2 1 SCOP 63882 MoeA N-terminal region -like
2 1 1 1 SCOP 55945 TATA-box binding protein-like
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
2 2 2 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
2 2 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
2 2 2 0 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
2 2 2 0 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 88802 Pre-PUA domain
2 1 1 1 SCOP 55112 Formylmethanofuran:tetrahydromethanopterin formyltransferase
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 0 SCOP 53927 Cytidine deaminase-like
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 53597 Dihydrofolate reductase-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 0 SCOP 82784 OsmC-like
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
1 1 1 0 SCOP 54611 SecB-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 50715 Ribosomal protein L25-like
1 1 1 0 SCOP 54292 2Fe-2S ferredoxin-like
1 1 1 0 SCOP 55811 Nudix
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 56276 S-adenosylmethionine decarboxylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 48576 Terpenoid synthases
1 1 1 1 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 1 SCOP 51419 PLP-binding barrel
1 1 1 1 SCOP 49764 HSP20-like chaperones
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 89957 MTH1187/YkoF-like
1 1 1 1 SCOP 48140 Ribosomal protein L19 (L19e)
1 1 1 1 SCOP 52042 Ribosomal protein L32e
1 1 1 0 SCOP 55469 FMN-dependent nitroreductase-like
1 1 1 0 SCOP 54575 Ribosomal protein L31e
1 1 1 0 SCOP 51726 UROD/MetE-like
1 1 1 1 SCOP 103456 Preprotein translocase SecE subunit
1 1 1 1 SCOP 56322 ADC synthase
1 1 1 0 SCOP 111278 SSo0622-like
1 1 1 0 SCOP 159468 AtpF-like
1 1 1 0 SCOP 63393 RNA polymerase subunits
1 1 1 0 SCOP 55144 LigT-like
1 1 1 0 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
1 1 1 1 SCOP 144210 Nop10-like SnoRNP
1 1 1 0 SCOP 89895 FYSH domain
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 1 0 SCOP 51306 LexA/Signal peptidase
1 1 1 1 SCOP 47819 HRDC-like
1 1 1 0 SCOP 48439 Protein prenylyltransferase
1 1 1 0 SCOP 48662 Ribosomal protein L39e
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
1 1 1 1 SCOP 103486 V-type ATP synthase subunit C
1 1 1 0 SCOP 143870 PF0523-like
1 1 1 1 SCOP 53032 tRNA-intron endonuclease catalytic domain-like
1 1 1 1 SCOP 56529 FAH
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 56399 ADP-ribosylation
1 1 1 0 SCOP 46924 RNA polymerase subunit RPB10
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 143447 AMMECR1-like
1 1 1 1 SCOP 55909 Pentein
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 63965 Precorrin-8X methylmutase CbiC/CobH
1 1 1 0 SCOP 101960 Stabilizer of iron transporter SufD
1 1 1 0 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
1 1 1 1 SCOP 141734 HisI-like
1 1 1 1 SCOP 101478 ADP-ribosylglycohydrolase
1 1 1 1 SCOP 52172 CheY-like
1 1 1 1 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 118196 YaeB-like
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 0 SCOP 51230 Single hybrid motif
1 1 1 1 SCOP 51679 Bacterial luciferase-like
1 1 1 1 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 1 0 SCOP 81901 HCP-like
1 1 1 0 SCOP 101744 Rof/RNase P subunit-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 64167 SurE-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 0 SCOP 81340 Clc chloride channel
1 1 1 0 SCOP 161111 Cation efflux protein transmembrane domain-like
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 102215 Creatininase
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 53822 Periplasmic binding protein-like I
1 1 1 0 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 53213 LigB-like
1 1 1 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
1 1 1 1 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
1 1 1 0 SCOP 101307 YutG-like
1 1 1 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
1 1 1 0 SCOP 159664 CobE/GbiG C-terminal domain-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 1 SCOP 140478 LemA-like
1 1 1 0 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 143631 ApbE-like
1 1 1 1 SCOP 143430 TTP0101/SSO1404-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 1 SCOP 117457 FumA C-terminal domain-like
1 1 1 1 SCOP 161070 SNF-like
1 1 1 1 SCOP 64288 Chorismate lyase-like
1 1 1 1 SCOP 142338 CofD-like
1 1 1 0 SCOP 53041 Resolvase-like
1 1 1 0 SCOP 69786 YggU-like
1 1 1 0 SCOP 159127 HupF/HypC-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 47781 RuvA domain 2-like
1 1 1 1 SCOP 56271 Pyruvoyl-dependent histidine and arginine decarboxylases
1 1 1 0 SCOP 89562 RraA-like
1 1 1 1 SCOP 56726 DNA topoisomerase IV, alpha subunit
1 1 1 0 SCOP 159672 CbiG N-terminal domain-like
1 1 1 1 SCOP 102198 Putative cyclase
1 1 1 1 SCOP 82704 AlbA-like
1 1 1 0 SCOP 46950 Double-stranded DNA-binding domain
1 1 1 0 SCOP 74784 Translin
1 1 1 1 SCOP 89124 Nop domain
1 1 1 1 SCOP 111321 AF1104-like
1 1 1 1 SCOP 142535 AF0625-like
1 1 1 0 SCOP 143560 MK0786-like
1 1 1 1 SCOP 111249 Sulfolobus fructose-1,6-bisphosphatase-like
1 1 1 1 SCOP 158436 Ta0600-like
1 1 1 1 SCOP 160975 AF1531-like
1 1 1 1 SCOP 160350 Rnp2-like
1 1 1 0 SCOP 49367 Superoxide reductase-like
1 1 1 0 SCOP 54984 eEF-1beta-like
1 1 1 0 SCOP 55186 ThrRS/AlaRS common domain
1 1 1 1 SCOP 69819 MTH1598-like
1 1 1 1 SCOP 55287 RPB5-like RNA polymerase subunit
1 1 1 0 SCOP 116820 Rps17e-like
1 1 1 0 SCOP 160374 RplX-like
1 1 1 1 SCOP 102462 Peptidyl-tRNA hydrolase II
1 1 1 0 SCOP 158372 AF1782-like
1 1 1 1 SCOP 69695 SRP19
1 1 1 1 SCOP 160363 MTH889-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
1 1 1 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 0 SCOP 143865 CorA soluble domain-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 0 SCOP 50156 PDZ domain-like
1 1 1 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 116960 YfbU-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 142823 ComB-like
1 1 1 0 SCOP 159713 Dhaf3308-like
1 1 1 0 SCOP 161187 YfgJ-like
1 1 1 1 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 1 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 47188 Hemerythrin-like
1 1 1 0 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 1 SCOP 48019 post-AAA+ oligomerization domain-like
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 1 SCOP 160945 PH0156-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 1 SCOP 102324 F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)
1 1 1 0 SCOP 111342 CbiD-like
1 1 1 1 SCOP 56199 Methenyltetrahydromethanopterin cyclohydrolase
1 1 1 0 SCOP 81665 Calcium ATPase, transmembrane domain M
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 56037 PheT/TilS domain
1 1 1 0 SCOP 75704 Mitotic arrest deficient-like 1, Mad1
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 143968 UbiD C-terminal domain-like
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 89915 DNA-binding protein Tfx
1 1 1 0 SCOP 69025 Hypothetical protein MTH865
1 1 1 1 SCOP 75181 Hypothetical protein MTH777 (MT0777)
1 1 1 0 SCOP 53623 MurD-like peptide ligases, catalytic domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57825 Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain
1 1 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
1 1 1 0 SCOP 63380 Riboflavin synthase domain-like
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 48310 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 1 0 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 1 SCOP 75569 Archaeal IMP cyclohydrolase PurO
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 0 SCOP 75689 Zinc-binding domain of translation initiation factor 2 beta
1 1 1 1 SCOP 100966 Translation initiation factor 2 beta, aIF2beta, N-terminal domain
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
1 1 1 1 SCOP 158702 Sec63 N-terminal domain-like
1 1 1 0 SCOP 101332 Hypothetical protein MTH393
1 1 1 0 SCOP 75412 Hypothetical protein MTH1880
1 1 1 0 SCOP 117892 Band 7/SPFH domain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 0 SCOP 101852 Bacterial fluorinating enzyme, C-terminal domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 1 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 81271 TGS-like
1 1 1 0 SCOP 102522 Bacterial fluorinating enzyme, N-terminal domain
1 1 1 0 SCOP 116742 eIF2alpha middle domain-like
1 1 1 1 SCOP 101690 PAZ domain
1 1 1 0 SCOP 55481 N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
1 1 1 1 SCOP 88798 N-terminal, heterodimerisation domain of RBP7 (RpoE)
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 1 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 81653 Calcium ATPase, transduction domain A
1 1 1 0 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
1 1 1 0 SCOP 110993 eIF-2-alpha, C-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 0 SCOP 56228 Aldehyde ferredoxin oxidoreductase, N-terminal domain
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 160527 V-type ATPase subunit E-like
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 159065 Dom34/Pelota N-terminal domain-like
1 1 1 1 SCOP 89000 post-HMGL domain-like
1 1 1 1 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 55003 PAP/Archaeal CCA-adding enzyme, C-terminal domain
1 1 1 1 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 54585 Cdc48 domain 2-like
1 1 1 1 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54893 Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain
1 1 1 1 SCOP 109728 Hypothetical protein AF0491, middle domain
1 1 1 0 SCOP 141300 GatD N-terminal domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain
1 1 1 1 SCOP 55267 tRNA-intron endonuclease N-terminal domain-like
1 1 1 0 SCOP 52913 RNA 3'-terminal phosphate cyclase, RPTC, insert domain
1 1 1 0 SCOP 159071 TrmB C-terminal domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily ABC transporter transmembrane region
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily Sigma2 domain of RNA polymerase sigma factors
SCOP superfamily Zn-finger domain of Sec23/24
SCOP superfamily GIY-YIG endonuclease
SCOP superfamily N-utilization substance G protein NusG, N-terminal domain
SCOP superfamily SufE/NifU
SCOP superfamily DAK1/DegV-like
SCOP superfamily Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP superfamily RuBisCo LSMT C-terminal, substrate-binding domain
SCOP superfamily a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily PP2C-like
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Adenylylcyclase toxin (the edema factor)
SCOP superfamily Release factor
SCOP superfamily HprK N-terminal domain-like
SCOP superfamily Small protein B (SmpB)
SCOP superfamily NSP3 homodimer
SCOP superfamily Cell wall binding repeat
SCOP superfamily C-terminal domain of adenylylcyclase associated protein
SCOP superfamily Phage tail proteins
SCOP superfamily Integrin domains
SCOP superfamily RecG, N-terminal domain
SCOP superfamily Methuselah ectodomain
SCOP superfamily Calcium-dependent phosphotriesterase
SCOP superfamily Sortase
SCOP superfamily PTS-regulatory domain, PRD
SCOP superfamily LuxS/MPP-like metallohydrolase
SCOP superfamily Apolipoprotein A-I
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Influenza hemagglutinin (stalk)
SCOP superfamily SNARE fusion complex
SCOP superfamily Tropomyosin
SCOP superfamily Leucine zipper domain
SCOP superfamily FYVE/PHD zinc finger
SCOP superfamily Cysteine-rich domain
SCOP superfamily RING/U-box
SCOP superfamily beta-beta-alpha zinc fingers
SCOP superfamily Aerolisin/ETX pore-forming domain
SCOP superfamily delta-Endotoxin (insectocide), N-terminal domain
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily Serpins
SCOP superfamily DNA topoisomerase I domain
SCOP superfamily Phoshotransferase/anion transport protein
SCOP superfamily GAF domain-like
SCOP superfamily SRF-like
SCOP superfamily Ribosome recycling factor, RRF
SCOP superfamily TRADD, N-terminal domain
SCOP superfamily RNA-binding domain, RBD
SCOP superfamily Tubby C-terminal domain-like
SCOP superfamily Superantigen toxins, C-terminal domain
SCOP superfamily Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP superfamily B12-dependent dehydatase associated subunit
SCOP superfamily ATP synthase (F1-ATPase), gamma subunit
SCOP superfamily Cobalamin (vitamin B12)-binding domain
SCOP superfamily MurCD N-terminal domain
SCOP superfamily Cobalamin (vitamin B12)-dependent enzymes
SCOP superfamily PLC-like phosphodiesterases
SCOP superfamily NAD(P)-linked oxidoreductase
SCOP superfamily Clavaminate synthase-like
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily WD40 repeat-like
SCOP superfamily Thermostable phytase (3-phytase)
SCOP superfamily Soluble quinoprotein glucose dehydrogenase
SCOP superfamily Cyclophilin-like
SCOP superfamily MOP-like
SCOP superfamily Inorganic pyrophosphatase
SCOP superfamily Galactose-binding domain-like
SCOP superfamily Bacterial adhesins
SCOP superfamily Carbohydrate-binding domain
SCOP superfamily Multiheme cytochromes
SCOP superfamily Transducin (heterotrimeric G protein), gamma chain
SCOP superfamily 14-3-3 protein
SCOP superfamily GTPase activation domain, GAP
SCOP superfamily DNA repair protein MutS, domain III
SCOP superfamily Citrate synthase
SCOP superfamily FliG
SCOP superfamily Functional domain of the splicing factor Prp18
SCOP superfamily PAH2 domain
SCOP superfamily t-snare proteins
SCOP superfamily SWIB/MDM2 domain
SCOP superfamily EF-hand
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily Tubulin chaperone cofactor A
SCOP superfamily Spectrin repeat
SCOP superfamily CRAL/TRIO N-terminal domain
SCOP superfamily C-terminal effector domain of the bipartite response regulators
SCOP superfamily Globin-like
SCOP superfamily Gam-like
SCOP superfamily NE1680-like
SCOP superfamily YqaI-like
SCOP superfamily SMI1/KNR4-like
SCOP superfamily PA1123-like
SCOP superfamily NosL/MerB-like
SCOP superfamily PMT central region-like
SCOP superfamily AGR C 984p-like
SCOP superfamily GINS helical bundle-like
SCOP superfamily DsbB-like
SCOP superfamily occludin/ELL-like
SCOP superfamily HIT/MYND zinc finger-like
SCOP superfamily FdhE-like
SCOP superfamily DUSP-like
SCOP superfamily CinA-like
SCOP superfamily CarD-like
SCOP superfamily Agglutinin HPA-like
SCOP superfamily PriB N-terminal domain-like
SCOP superfamily SipA N-terminal domain-like
SCOP superfamily Rv1873-like
SCOP superfamily Phage replication organizer domain
SCOP superfamily YoaC-like
SCOP superfamily EB1 dimerisation domain-like
SCOP superfamily TM0693-like
SCOP superfamily Proton glutamate symport protein
SCOP superfamily Vacuolar ATP synthase subunit C
SCOP superfamily AF0104/ALDC/Ptd012-like
SCOP superfamily Putative glucosidase YicI, C-terminal domain
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily Hook domain
SCOP superfamily Fzo-like conserved region
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily OmpH-like
SCOP superfamily Recombination protein RecR
SCOP superfamily Triger factor/SurA peptide-binding domain-like
SCOP superfamily VPS9 domain
SCOP superfamily Hypothetical protein Ta0289 C-terminal domain
SCOP superfamily Respiratory nitrate reductase 1 gamma chain
SCOP superfamily Colicin D/E5 nuclease domain
SCOP superfamily Eukaryotic initiation factor 4f subunit eIF4g, eIF4e-binding domain
SCOP superfamily Methenyltetrahydrofolate cyclohydrolase-like
SCOP superfamily Flagellar export chaperone FliS
SCOP superfamily Typo IV secretion system protein TraC
SCOP superfamily Heat shock protein 70kD (HSP70), C-terminal subdomain

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