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Mycoplasma suis str. Illinois superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma; Mycoplasma suis; Mycoplasma suis str. Illinois

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 845 total
273 (32 %) with assignment
260 average length
35 % amino acid coverage
Domains: 392 total
200 unique superfamilies
81 unique families
279 average length
2 average superfamily size
49 % formed by duplication
Domain combinations: 88 domain pairs
208 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

44 40 22 7 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
24 22 3 0 SCOP 116734 DNA methylase specificity domain
11 10 7 2 SCOP 50249 Nucleic acid-binding proteins
10 10 8 1 SCOP 52374 Nucleotidylyl transferase
10 10 7 1 SCOP 55681 Class II aaRS and biotin synthetases
9 8 4 1 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
6 6 5 2 SCOP 54211 Ribosomal protein S5 domain 2-like
6 5 5 2 SCOP 50447 Translation proteins
6 6 5 0 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
5 3 3 2 SCOP 53067 Actin-like ATPase domain
4 4 3 0 SCOP 161098 MetI-like
4 4 3 1 SCOP 50104 Translation proteins SH3-like domain
4 4 2 1 SCOP 109604 HD-domain/PDEase-like
4 4 2 0 SCOP 52954 Class II aaRS ABD-related
4 4 2 0 SCOP 50494 Trypsin-like serine proteases
4 2 2 0 SCOP 57783 Zinc beta-ribbon
4 2 2 1 SCOP 54980 EF-G C-terminal domain-like
3 3 3 1 SCOP 52317 Class I glutamine amidotransferase-like
3 3 3 2 SCOP 53271 PRTase-like
3 3 3 2 SCOP 51735 NAD(P)-binding Rossmann-fold domains
3 3 2 0 SCOP 56784 HAD-like
3 3 1 0 SCOP 58113 Apolipoprotein A-I
3 2 2 0 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 1 1 0 SCOP 55973 S-adenosylmethionine synthetase
3 2 2 0 SCOP 101904 GyrA/ParC C-terminal domain-like
3 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 0 SCOP 55120 Pseudouridine synthase
2 2 2 0 SCOP 64182 DHH phosphoesterases
2 2 1 0 SCOP 52218 Flavoproteins
2 2 2 0 SCOP 46785 "Winged helix" DNA-binding domain
2 2 1 0 SCOP 143800 L28p-like
2 2 2 0 SCOP 53098 Ribonuclease H-like
2 2 2 1 SCOP 75217 alpha/beta knot
2 2 2 0 SCOP 52980 Restriction endonuclease-like
2 2 1 0 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 0 SCOP 52402 Adenine nucleotide alpha hydrolases-like
2 2 1 0 SCOP 81333 F1F0 ATP synthase subunit C
2 1 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 2 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
2 2 1 0 SCOP 56281 Metallo-hydrolase/oxidoreductase
2 2 2 0 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 0 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 1 1 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
2 1 1 0 SCOP 56024 Phospholipase D/nuclease
2 2 2 0 SCOP 47781 RuvA domain 2-like
2 2 2 0 SCOP 46565 Chaperone J-domain
2 2 2 0 SCOP 46589 tRNA-binding arm
2 2 2 1 SCOP 56719 Type II DNA topoisomerase
2 1 1 0 SCOP 56053 Ribosomal protein L6
2 2 2 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
2 2 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 2 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 1 1 SCOP 51556 Metallo-dependent hydrolases
1 1 1 0 SCOP 56731 DNA primase core
1 1 1 1 SCOP 51569 Aldolase
1 1 1 0 SCOP 48013 NusB-like
1 1 1 0 SCOP 55594 HPr-like
1 1 1 1 SCOP 53167 Purine and uridine phosphorylases
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 0 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 0 SCOP 51905 FAD/NAD(P)-binding domain
1 1 1 0 SCOP 143597 YojJ-like
1 1 1 0 SCOP 56112 Protein kinase-like (PK-like)
1 1 1 1 SCOP 53697 SIS domain
1 1 1 0 SCOP 52833 Thioredoxin-like
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 0 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 0 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
1 1 1 0 SCOP 56047 Ribosomal protein S8
1 1 1 0 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 1 SCOP 55920 Creatinase/aminopeptidase
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 0 SCOP 46946 S13-like H2TH domain
1 1 1 0 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 0 SCOP 56300 Metallo-dependent phosphatases
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 47240 Ferritin-like
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 51658 Xylose isomerase-like
1 1 1 1 SCOP 75620 Release factor
1 1 1 0 SCOP 103473 MFS general substrate transporter
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 55174 Alpha-L RNA-binding motif
1 1 1 0 SCOP 53383 PLP-dependent transferases
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
1 1 1 0 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
1 1 1 0 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 109755 PhoU-like
1 1 1 0 SCOP 53850 Periplasmic binding protein-like II
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 0 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 53633 Carbamate kinase-like
1 1 1 0 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 48557 L-aspartase-like
1 1 1 0 SCOP 55821 YrdC/RibB
1 1 1 0 SCOP 51261 Duplicated hybrid motif
1 1 1 1 SCOP 53720 ALDH-like
1 1 1 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 56796 Dehydroquinate synthase-like
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 53187 Zn-dependent exopeptidases
1 1 1 0 SCOP 51430 NAD(P)-linked oxidoreductase
1 1 1 0 SCOP 54534 FKBP-like
1 1 1 1 SCOP 53649 Alkaline phosphatase-like
1 1 1 0 SCOP 55781 GAF domain-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 1 SCOP 55931 Glutamine synthetase/guanido kinase
1 1 1 0 SCOP 54631 CBS-domain pair
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 1 SCOP 51998 PFL-like glycyl radical enzymes
1 1 1 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
1 1 1 0 SCOP 89550 PHP domain-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 88697 PUA domain-like
1 1 1 0 SCOP 101386 all-alpha NTP pyrophosphatases
1 1 1 0 SCOP 159234 FomD-like
1 1 1 0 SCOP 55604 Glucose permease domain IIB
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 75138 HprK N-terminal domain-like
1 1 1 0 SCOP 50331 MOP-like
1 1 1 1 SCOP 51604 Enolase C-terminal domain-like
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 90123 ABC transporter transmembrane region
1 1 1 0 SCOP 55979 DNA clamp
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 161093 MgtE membrane domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 1 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 54826 Enolase N-terminal domain-like
1 1 1 0 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 54768 dsRNA-binding domain-like
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily YajQ-like
SCOP superfamily MTH1187/YkoF-like
SCOP superfamily eEF1-gamma domain
SCOP superfamily Cobalamin adenosyltransferase-like
SCOP superfamily Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
SCOP superfamily Myosin phosphatase inhibitor 17kDa protein, CPI-17
SCOP superfamily beta-catenin-interacting protein ICAT
SCOP superfamily Cytochrome c oxidase subunit I-like
SCOP superfamily Voltage-gated potassium channels
SCOP superfamily TGS-like
SCOP superfamily Glutamyl tRNA-reductase dimerization domain
SCOP superfamily Methyl-accepting chemotaxis protein (MCP) signaling domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Clostridium neurotoxins, "coiled-coil" domain
SCOP superfamily Coiled-coil domain of nucleotide exchange factor GrpE
SCOP superfamily Tropomyosin
SCOP superfamily Leucine zipper domain
SCOP superfamily Microbial and mitochondrial ADK, insert "zinc finger" domain
SCOP superfamily Viral glycoprotein, central and dimerisation domains
SCOP superfamily Lipovitellin-phosvitin complex; beta-sheet shell regions
SCOP superfamily Colicin
SCOP superfamily Phosphoglucomutase, C-terminal domain
SCOP superfamily SCP-like
SCOP superfamily eIF4e-like
SCOP superfamily eEF-1beta-like
SCOP superfamily Colicin E3 immunity protein
SCOP superfamily Prion-like
SCOP superfamily RNase A-like
SCOP superfamily Tryptophan synthase beta subunit-like PLP-dependent enzymes
SCOP superfamily CoA-dependent acyltransferases
SCOP superfamily FabD/lysophospholipase-like
SCOP superfamily Outer surface protein
SCOP superfamily WD40 repeat-like
SCOP superfamily PH domain-like
SCOP superfamily Sm-like ribonucleoproteins
SCOP superfamily gene 59 helicase assembly protein
SCOP superfamily ARM repeat
SCOP superfamily Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain
SCOP superfamily DEATH domain
SCOP superfamily N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP superfamily Transducin (alpha subunit), insertion domain
SCOP superfamily Annexin
SCOP superfamily t-snare proteins
SCOP superfamily EF-hand
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily Spectrin repeat
SCOP superfamily Elongation factor TFIIS domain 2
SCOP superfamily DNA helicase RuvA subunit, C-terminal domain
SCOP superfamily YacF-like
SCOP superfamily BTG domain-like
SCOP superfamily YonK-like
SCOP superfamily XkdW-like
SCOP superfamily Cgl1923-like
SCOP superfamily YopX-like
SCOP superfamily IVS-encoded protein-like
SCOP superfamily Sec2 N-terminal region
SCOP superfamily Oxysterol-binding protein-like
SCOP superfamily YwmB-like
SCOP superfamily Mediator hinge subcomplex-like
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily FlgN-like
SCOP superfamily LemA-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily BAR/IMD domain-like
SCOP superfamily G protein-binding domain
SCOP superfamily Superantigen (mitogen) Ypm
SCOP superfamily Formin homology 2 domain (FH2 domain)

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