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  Home > Genomes > Family assignments for Desulfovibrio vulgaris str. 'Miyazaki F'


Desulfovibrio vulgaris str. 'Miyazaki F' family assignments

Taxonomy
Taxonomy browser entry

Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio vulgaris; Desulfovibrio vulgaris str. 'Miyazaki F'

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 3180 total
2260 (71 %) with assignment
349 average length
63 % amino acid coverage
Domains: 3502 total
678 unique superfamilies
445 unique families
308 average length
5.2 average superfamily size
81 % formed by duplication
Domain combinations: 470 domain pairs
1130 unique architectures

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Family assignments

Domains

Proteins

SCOP link

Families
50 49 SCOP 52686 ABC transporter ATPase domain-like
49 47 SCOP 81269 Extended AAA-ATPase domain
39 39 SCOP 58105 Methyl-accepting chemotaxis protein (MCP) signaling domain
15 15 SCOP 51751 Tyrosine-dependent oxidoreductases
13 13 SCOP 117984 GGDEF domain
11 11 SCOP 53851 Phosphate binding protein-like
11 7 SCOP 81268 Tandem AAA-ATPase domain
10 10 SCOP 52375 Class I aminoacyl-tRNA synthetases (RS), catalytic domain
10 10 SCOP 52592 G proteins
10 10 SCOP 53384 AAT-like
10 10 SCOP 53707 Formate dehydrogenase/DMSO reductase, domains 1-3
9 9 SCOP 55682 Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
8 8 SCOP 52670 RecA protein-like (ATPase-domain)
8 8 SCOP 53417 GABA-aminotransferase-like
7 7 SCOP 51396 FMN-linked oxidoreductases
7 6 SCOP 52652 Nitrogenase iron protein-like
6 3 SCOP 53068 Actin/HSP70
6 5 SCOP 56067 BC ATP-binding domain-like
6 6 SCOP 56802 Acetyl-CoA synthetase-like
6 6 SCOP 69892 Iron-containing alcohol dehydrogenase
6 3 SCOP 82867 Multidrug efflux transporter AcrB transmembrane domain
5 5 SCOP 50282 Cold shock DNA-binding domain-like
5 5 SCOP 51830 Formate/glycerate dehydrogenases, NAD-domain
5 5 SCOP 52318 Class I glutamine amidotransferases (GAT)
5 5 SCOP 53272 Phosphoribosyltransferases (PRTases)
5 5 SCOP 54884 Ferredoxin domains from multidomain proteins
5 2 SCOP 63412 MPP-like
4 4 SCOP 47241 Ferritin
4 4 SCOP 48558 L-aspartase/fumarase
4 4 SCOP 48711 Di-heme elbow motif
4 4 SCOP 50696 Formate dehydrogenase/DMSO reductase, C-terminal domain
4 4 SCOP 51934 Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
4 3 SCOP 52441 BC N-terminal domain-like
4 4 SCOP 53402 Cystathionine synthase-like
4 4 SCOP 53687 Tryptophan synthase beta subunit-like PLP-dependent enzymes
4 4 SCOP 53721 ALDH-like
4 4 SCOP 53816 Nitrogenase iron-molybdenum protein
4 4 SCOP 55348 GAPDH-like
4 4 SCOP 56955 Outer membrane efflux proteins (OEP)
4 4 SCOP 64519 Phase 1 flagellin
3 3 SCOP 46978 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
3 3 SCOP 50448 Elongation factors
3 3 SCOP 50678 ValRS/IleRS/LeuRS editing domain
3 3 SCOP 51420 Alanine racemase-like, N-terminal domain
3 3 SCOP 51570 Class I aldolase
3 3 SCOP 51800 Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
3 3 SCOP 51868 6-phosphogluconate dehydrogenase-like, N-terminal domain
3 3 SCOP 51883 Aminoacid dehydrogenase-like, C-terminal domain
3 3 SCOP 52173 CheY-related
3 2 SCOP 52211 Succinyl-CoA synthetase domains
3 3 SCOP 52325 DJ-1/PfpI
3 3 SCOP 52403 N-type ATP pyrophosphatases
3 3 SCOP 52541 Nucleotide and nucleoside kinases
3 2 SCOP 53080 Acetokinase-like
3 3 SCOP 53329 Formyltransferase
3 1 SCOP 53739 Phosphoglucomutase, first 3 domains
3 3 SCOP 53823 L-arabinose binding protein-like
3 3 SCOP 54212 Translational machinery components
3 3 SCOP 55327 PurM N-terminal domain-like
3 3 SCOP 55884 Histidine kinase
3 1 SCOP 55974 S-adenosylmethionine synthetase
3 3 SCOP 56043 PurM C-terminal domain-like
3 3 SCOP 56426 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
3 3 SCOP 56656 Inositol monophosphatase/fructose-1,6-bisphosphatase-like
3 3 SCOP 56763 Nickel-iron hydrogenase, large subunit
3 3 SCOP 56771 Nickel-iron hydrogenase, small subunit
3 3 SCOP 68901 Cytidylytransferase
3 3 SCOP 102769 ATP-dependent protease Lon (La), catalytic domain
3 3 SCOP 111370 HlyD-like secretion proteins
3 3 SCOP 144028 Nqo4-like
2 2 SCOP 47324 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
2 2 SCOP 47918 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 SCOP 48577 Isoprenyl diphosphate synthases
2 2 SCOP 48696 Cytochrome c3-like
2 2 SCOP 50495 Prokaryotic proteases
2 2 SCOP 50892 Cyclophilin (peptidylprolyl isomerase)
2 2 SCOP 51367 Histidine biosynthesis enzymes
2 2 SCOP 51381 Tryptophan biosynthesis enzymes
2 2 SCOP 51392 Thiamin phosphate synthase
2 2 SCOP 51446 Amylase, catalytic domain
2 2 SCOP 52219 Flavodoxin-related
2 2 SCOP 52297 L-alanine dehydrogenase-like
2 2 SCOP 52475 Pyruvate oxidase and decarboxylase, middle domain
2 2 SCOP 52739 Methylesterase CheB, C-terminal domain
2 2 SCOP 52901 Glutathione peroxidase-like
2 1 SCOP 53089 Glycerol kinase
2 2 SCOP 53138 Ribosomal protein L18 and S11
2 2 SCOP 53204 Bacterial dinuclear zinc exopeptidases
2 2 SCOP 53245 MurCDEF C-terminal domain
2 2 SCOP 53461 UDP-glucose pyrophosphorylase
2 2 SCOP 53620 Thiamin biosynthesis kinases
2 2 SCOP 53624 MurCDEF
2 2 SCOP 53660 Dimeric isocitrate & isopropylmalate dehydrogenases
2 2 SCOP 53672 Aspartate/ornithine carbamoyltransferase
2 2 SCOP 53733 Aconitase iron-sulfur domain
2 2 SCOP 53791 Tetrapyrrole methylase
2 1 SCOP 53902 Thiolase-related
2 1 SCOP 54229 Ribonuclease PH domain 1-like
2 2 SCOP 54632 CBS-domain pair
2 2 SCOP 54815 Prokaryotic type KH domain (KH-domain type II)
2 2 SCOP 54914 Prokaryotic signal transducing protein
2 1 SCOP 54981 EF-G/eEF-2 domains III and V
2 2 SCOP 55209 Enolpyruvate transferase, EPT
2 2 SCOP 55368 Dihydrodipicolinate reductase-like
2 2 SCOP 55879 DNA gyrase/MutL, N-terminal domain
2 2 SCOP 55921 Creatinase/aminopeptidase
2 2 SCOP 56015 Nitrite and sulphite reductase 4Fe-4S domain-like
2 2 SCOP 56229 Aldehyde ferredoxin oxidoreductase, N-terminal domain
2 2 SCOP 56236 Class II glutamine amidotransferases
2 2 SCOP 56291 ROO N-terminal domain-like
2 2 SCOP 56323 ADC synthase
2 2 SCOP 56350 Lambda integrase-like, catalytic core
2 2 SCOP 56602 beta-Lactamase/D-ala carboxypeptidase
2 2 SCOP 56713 Prokaryotic type I DNA topoisomerase
2 2 SCOP 64372 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB
2 1 SCOP 69280 Baseplate protein-like
2 2 SCOP 75218 SpoU-like RNA 2'-O ribose methyltransferase
2 2 SCOP 75621 Release factor
2 2 SCOP 88683 Eukaryotic ODC-like
2 2 SCOP 88724 Pyruvate oxidase and decarboxylase Pyr module
2 2 SCOP 88749 Pyruvate oxidase and decarboxylase PP module
2 1 SCOP 89572 Biotin dependent carboxylase carboxyltransferase domain
2 2 SCOP 89800 Deoxycytidylate deaminase-like
2 2 SCOP 101340 HD domain
2 2 SCOP 102406 MoCo carrier protein-like
2 2 SCOP 109756 PhoU-like
2 2 SCOP 110368 NeuB-like
2 1 SCOP 110384 Cobalamin-independent methionine synthase
2 2 SCOP 111039 YjbQ-like
2 2 SCOP 111353 Ammonium transporter
2 2 SCOP 141723 LON domain-like
2 2 SCOP 142678 Glycine dehydrogenase subunits (GDC-P)
2 2 SCOP 142721 PyrH-like
2 2 SCOP 159832 PBP transglycosylase domain-like
2 2 SCOP 160336 DsrA/DsrB N-terminal-domain-like
1 1 SCOP 46549 Fumarate reductase/Succinate dehydogenase iron-sulfur protein, C-terminal domain
1 1 SCOP 46610 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 SCOP 46627 monodomain cytochrome c
1 1 SCOP 46768 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
1 1 SCOP 46907 Ribosomal protein L11, C-terminal domain
1 1 SCOP 46947 Ribosomal protein S13
1 1 SCOP 47064 Ribosomal protein S15
1 1 SCOP 47447 Signal peptide-binding domain
1 1 SCOP 47730 Prokaryotic DNA-bending protein
1 1 SCOP 47742 CO dehydrogenase ISP C-domain like
1 1 SCOP 47974 Ribosomal protein S7
1 1 SCOP 48025 N-terminal domain of DnaB helicase
1 1 SCOP 48030 FliG
1 1 SCOP 48151 Endonuclease III
1 1 SCOP 48154 Mismatch glycosylase
1 1 SCOP 48180 Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
1 1 SCOP 48184 Acetohydroxy acid isomeroreductase (ketol-acid reductoisomerase, KARI)
1 1 SCOP 48311 Aldehyde ferredoxin oxidoreductase, C-terminal domains
1 1 SCOP 48335 DNA repair protein MutS, domain III
1 1 SCOP 48593 GroEL chaperone, ATPase domain
1 1 SCOP 49368 Superoxide reductase-like
1 1 SCOP 50114 C-terminal domain of ribosomal protein L2
1 1 SCOP 50130 GroES
1 1 SCOP 50194 Ribosomal protein L14
1 1 SCOP 50250 Anticodon-binding domain
1 1 SCOP 50263 Single strand DNA-binding domain, SSB
1 1 SCOP 50461 Ribosomal protein L3
1 1 SCOP 50466 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 SCOP 50476 PNP-oxidase like
1 1 SCOP 50616 N-terminal domain of alpha and beta subunits of F1 ATP synthase
1 1 SCOP 50719 Gln-tRNA synthetase (GlnRS), C-terminal (anticodon-binding) domain
1 1 SCOP 51162 UDP N-acetylglucosamine acyltransferase
1 1 SCOP 51171 GlmU C-terminal domain-like
1 1 SCOP 51183 dTDP-sugar isomerase
1 1 SCOP 51231 Biotinyl/lipoyl-carrier proteins and domains
1 1 SCOP 51284 dUTPase-like
1 1 SCOP 51312 Type 1 signal peptidase
1 1 SCOP 51352 Triosephosphate isomerase (TIM)
1 1 SCOP 51372 D-ribulose-5-phosphate 3-epimerase
1 1 SCOP 51375 Decarboxylase
1 1 SCOP 51413 Inosine monophosphate dehydrogenase (IMPDH)
1 1 SCOP 51553 NagZ-like
1 1 SCOP 51591 Class II FBP aldolase
1 1 SCOP 51594 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase)
1 1 SCOP 51599 Class I DAHP synthetase
1 1 SCOP 51605 Enolase
1 1 SCOP 51622 Pyruvate kinase
1 1 SCOP 51638 HpcH/HpaI aldolase
1 1 SCOP 51646 Malate synthase G
1 1 SCOP 51659 Endonuclease IV
1 1 SCOP 51691 NadC C-terminal domain-like
1 1 SCOP 51714 tRNA-guanine transglycosylase
1 1 SCOP 51718 Dihydropteroate synthetase
1 1 SCOP 51731 Methylenetetrahydrofolate reductase
1 1 SCOP 51736 Alcohol dehydrogenase-like, C-terminal domain
1 1 SCOP 51900 CoA-binding domain
1 1 SCOP 51985 MurCD N-terminal domain
1 1 SCOP 52017 LeuD-like
1 1 SCOP 52022 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 SCOP 52030 GroEL-like chaperone, apical domain
1 1 SCOP 52081 Ribosomal proteins L15p and L18e
1 1 SCOP 52097 Clp protease, ClpP subunit
1 1 SCOP 52100 Tail specific protease, catalytic domain
1 1 SCOP 52122 Lumazine synthase
1 1 SCOP 52142 Uracil-DNA glycosylase
1 1 SCOP 52152 FabD-like
1 1 SCOP 52162 Ribosomal protein L13
1 1 SCOP 52167 Ribosomal protein L4
1 1 SCOP 52256 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 SCOP 52300 S-adenosylhomocystein hydrolase
1 1 SCOP 52305 Type II 3-dehydroquinate dehydratase
1 1 SCOP 52314 Ribosomal protein S2
1 1 SCOP 52397 Adenylyltransferase
1 1 SCOP 52419 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 SCOP 52491 Tubulin, GTPase domain
1 1 SCOP 52508 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 SCOP 52566 Shikimate kinase (AroK)
1 1 SCOP 52734 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 SCOP 52773 Histone deacetylase, HDAC
1 1 SCOP 52923 Transketolase C-terminal domain-like
1 1 SCOP 52931 Pyruvate-ferredoxin oxidoreductase, PFOR, domain II
1 1 SCOP 52944 ATP synthase (F1-ATPase), gamma subunit
1 1 SCOP 52973 ITPase (Ham1)
1 1 SCOP 52976 Maf-like
1 1 SCOP 53057 beta-carbonic anhydrase, cab
1 1 SCOP 53099 Ribonuclease H
1 1 SCOP 53134 RuvC resolvase
1 1 SCOP 53168 Purine and uridine phosphorylases
1 1 SCOP 53179 Peptidyl-tRNA hydrolase-like
1 1 SCOP 53201 Leucine aminopeptidase, C-terminal domain
1 1 SCOP 53214 LigB-like
1 1 SCOP 53235 Tetrahydrofolate dehydrogenase/cyclohydrolase
1 1 SCOP 53240 Malic enzyme N-domain
1 1 SCOP 53255 Cofactor-dependent phosphoglycerate mutase
1 1 SCOP 53296 Phosphoribosylpyrophosphate synthetase-like
1 1 SCOP 53324 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 SCOP 53354 Protein-L-isoaspartyl O-methyltransferase
1 1 SCOP 53357 Chemotaxis receptor methyltransferase CheR, C-terminal domain
1 1 SCOP 53464 glucose-1-phosphate thymidylyltransferase
1 1 SCOP 53682 Aspartate/glutamate racemase
1 1 SCOP 53698 double-SIS domain
1 1 SCOP 53701 Phosphoglucose isomerase, PGI
1 1 SCOP 53749 Phosphoglycerate kinase
1 1 SCOP 53760 Peptidoglycan biosynthesis glycosyltransferase MurG
1 1 SCOP 53785 Phosphofructokinase
1 1 SCOP 53804 Cobalt chelatase CbiK
1 1 SCOP 53811 TroA-like
1 1 SCOP 53914 Chalcone synthase-like
1 1 SCOP 54224 DNA gyrase/MutL, second domain
1 1 SCOP 54312 2Fe-2S ferredoxin domains from multidomain proteins
1 1 SCOP 54535 FKBP immunophilin/proline isomerase
1 1 SCOP 54571 Ribosomal protein S19
1 1 SCOP 54666 CO dehydrogenase molybdoprotein N-domain-like
1 1 SCOP 54714 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 SCOP 54720 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 SCOP 54737 Ribosomal protein L7/12, C-terminal domain
1 1 SCOP 54748 Ribosomal L11/L12e N-terminal domain
1 1 SCOP 54811 GMP synthetase C-terminal dimerisation domain
1 1 SCOP 54822 Ribosomal protein S3 C-terminal domain
1 1 SCOP 54827 Enolase N-terminal domain-like
1 1 SCOP 54844 Ribosomal protein L22
1 1 SCOP 54920 Nucleoside diphosphate kinase, NDK
1 1 SCOP 55000 Ribosomal protein S10
1 1 SCOP 55041 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 SCOP 55069 Peptide methionine sulfoxide reductase
1 1 SCOP 55084 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 SCOP 55121 Pseudouridine synthase I TruA
1 1 SCOP 55178 Ribosomal protein S4
1 1 SCOP 55187 Threonyl-tRNA synthetase (ThrRS), second 'additional' domain
1 1 SCOP 55195 Ribosome recycling factor, RRF
1 1 SCOP 55201 Translation initiation factor IF3, C-terminal domain
1 1 SCOP 55272 DNA repair protein MutS, domain I
1 1 SCOP 55283 Ribosomal protein L5
1 1 SCOP 55299 YjgF/L-PSP
1 1 SCOP 55308 Tubulin, C-terminal domain
1 1 SCOP 55667 Ribonuclease PH domain 2-like
1 1 SCOP 55730 N-acetyl transferase, NAT
1 1 SCOP 55827 YbaK/ProRS associated domain
1 1 SCOP 55875 Heat shock protein 90, HSP90, N-terminal domain
1 1 SCOP 55932 Glutamine synthetase catalytic domain
1 1 SCOP 56004 Molybdenum cofactor-binding domain
1 1 SCOP 56038 B3/B4 domain of PheRS, PheT
1 1 SCOP 56048 Ribosomal protein S8
1 1 SCOP 56054 Ribosomal protein L6
1 1 SCOP 56096 Adenylation domain of NAD+-dependent DNA ligase
1 1 SCOP 56105 SAICAR synthase
1 1 SCOP 56220 DNase I-like
1 1 SCOP 56251 Proteasome subunits
1 1 SCOP 56261 (Glycosyl)asparaginase
1 1 SCOP 56421 Peptide deformylase
1 1 SCOP 56530 FAH
1 1 SCOP 56635 Heme-dependent catalases
1 1 SCOP 56673 DNA polymerase I
1 1 SCOP 56720 Type II DNA topoisomerase
1 1 SCOP 56732 DNA primase DnaG catalytic core
1 1 SCOP 56753 D-aminoacid aminotransferase-like PLP-dependent enzymes
1 1 SCOP 56792 Phosphonoacetaldehyde hydrolase-like
1 1 SCOP 56809 Ribosomal protein L1
1 1 SCOP 56822 Hybrid cluster protein (prismane protein)
1 1 SCOP 56895 Aquaporin-like
1 1 SCOP 57803 Rubredoxin
1 1 SCOP 63883 MoeA N-terminal region -like
1 1 SCOP 63893 Pyridoxine 5'-phosphate synthase
1 1 SCOP 63966 Precorrin-8X methylmutase CbiC/CobH
1 1 SCOP 63971 Inosicase
1 1 SCOP 63976 Pantothenate synthetase (Pantoate-beta-alanine ligase, PanC)
1 1 SCOP 63979 ATP sulfurylase catalytic domain
1 1 SCOP 64006 Undecaprenyl diphosphate synthase
1 1 SCOP 64089 BadF/BadG/BcrA/BcrD-like
1 1 SCOP 64117 tRNA(1-methyladenosine) methyltransferase-like
1 1 SCOP 64159 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 SCOP 64162 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, catalytic domain
1 1 SCOP 64168 SurE-like
1 1 SCOP 64183 Manganese-dependent inorganic pyrophosphatase (family II)
1 1 SCOP 64198 AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
1 1 SCOP 64264 Prokaryotic ribosomal protein L17
1 1 SCOP 64485 RNA-polymerase beta
1 1 SCOP 64490 RNA-polymerase beta-prime
1 1 SCOP 64514 Carbon monoxide dehydrogenase
1 1 SCOP 69066 RNase III catalytic domain-like
1 1 SCOP 69501 DTD-like
1 1 SCOP 69565 Pyridoxal-dependent decarboxylase
1 1 SCOP 69599 mono-SIS domain
1 1 SCOP 69602 L-histidinol dehydrogenase HisD
1 1 SCOP 69706 Transcription factor NusA, N-terminal domain
1 1 SCOP 69722 DsrC, the gamma subunit of dissimilatory sulfite reductase
1 1 SCOP 69746 Pseudouridine synthase II TruB
1 1 SCOP 69766 IpsF-like
1 1 SCOP 69865 Argininosuccinate synthetase, C-terminal domain
1 1 SCOP 69912 Clc chloride channel
1 1 SCOP 74732 Ribosomal protein L20
1 1 SCOP 74756 3-Methyladenine DNA glycosylase I (Tag)
1 1 SCOP 74983 Small protein B (SmpB)
1 1 SCOP 75041 SelR domain
1 1 SCOP 75073 Hydantoinase (dihydropyrimidinase), catalytic domain
1 1 SCOP 75093 Hypothetical protein YgbM (EC1530)
1 1 SCOP 75292 YjeF C-terminal domain-like
1 1 SCOP 75297 N-acetyl-l-glutamate kinase
1 1 SCOP 75305 Amidase signature (AS) enzymes
1 1 SCOP 75323 Exonuclease RecJ
1 1 SCOP 75434 Divalent ion tolerance proteins CutA (CutA1)
1 1 SCOP 75459 Pseudouridine synthase RsuA/RluD
1 1 SCOP 75626 YebC-like
1 1 SCOP 75648 ABC transporter involved in vitamin B12 uptake, BtuC
1 1 SCOP 81441 Cytochrome c oxidase subunit I-like
1 1 SCOP 81656 Meta-cation ATPase, catalytic domain P
1 1 SCOP 81768 Pre-protein crosslinking domain of SecA
1 1 SCOP 81887 Helical scaffold and wing domains of SecA
1 1 SCOP 81924 Double Clp-N motif
1 1 SCOP 82052 Obg GTP-binding protein N-terminal domain
1 1 SCOP 82267 TatD Mg-dependent DNase-like
1 1 SCOP 82279 Proline dehydrohenase domain of bifunctional PutA protein
1 1 SCOP 82283 Homocysteine S-methyltransferase
1 1 SCOP 82469 Hypothetical Protein YjhP
1 1 SCOP 82545 GckA/TtuD-like
1 1 SCOP 82583 G domain-linked domain
1 1 SCOP 82694 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
1 1 SCOP 82749 FemXAB nonribosomal peptidyltransferases
1 1 SCOP 88735 TK-like Pyr module
1 1 SCOP 88746 PFOR Pyr module
1 1 SCOP 88760 TK-like PP module
1 1 SCOP 88771 PFOR PP module
1 1 SCOP 88784 rRNA adenine dimethylase-like
1 1 SCOP 88947 Sigma2 domain of RNA polymerase sigma factors
1 1 SCOP 89096 GatB/YqeY domain
1 1 SCOP 89503 Ketopantoate hydroxymethyltransferase PanB
1 1 SCOP 89590 NADPH-dependent FMN reductase
1 1 SCOP 89624 Ribose/Galactose isomerase RpiB/AlsB
1 1 SCOP 89629 tRNA(m1G37)-methyltransferase TrmD
1 1 SCOP 89724 Macro domain
1 1 SCOP 89734 L-sulfolactate dehydrogenase-like
1 1 SCOP 89743 N5-glutamine methyltransferase, HemK
1 1 SCOP 90087 GlpX-like bacterial fructose-1,6-bisphosphatase
1 1 SCOP 90124 ABC transporter transmembrane region
1 1 SCOP 100888 Lesion bypass DNA polymerase (Y-family), catalytic domain
1 1 SCOP 100921 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 SCOP 101048 Dissimilatory sulfite reductase DsvD
1 1 SCOP 101354 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 SCOP 101474 DhaL-like
1 1 SCOP 101802 Surface presentation of antigens (SPOA)
1 1 SCOP 101822 Aminopeptidase/glucanase lid domain
1 1 SCOP 101905 GyrA/ParC C-terminal domain-like
1 1 SCOP 101984 Pirin-like
1 1 SCOP 102115 Biotin synthase
1 1 SCOP 102317 NagD-like
1 1 SCOP 102575 NOL1/NOP2/sun
1 1 SCOP 102578 Ribosomal protein L11 methyltransferase PrmA
1 1 SCOP 102646 CoaB-like
1 1 SCOP 102656 PdxA-like
1 1 SCOP 102660 PlsX-like
1 1 SCOP 102663 Phosphotransacetylase
1 1 SCOP 102755 Hsp90 middle domain
1 1 SCOP 102772 YigZ N-terminal domain-like
1 1 SCOP 102928 NifU/IscU domain
1 1 SCOP 102945 RelA/SpoT domain
1 1 SCOP 103026 Aminomethyltransferase folate-binding domain
1 1 SCOP 103089 OmpA-like
1 1 SCOP 103257 Hypothetical protein TM0160
1 1 SCOP 103264 Chorismate synthase, AroC
1 1 SCOP 109613 DAK1
1 1 SCOP 110388 MoCo biosynthesis proteins
1 1 SCOP 110400 ThiG-like
1 1 SCOP 110513 IF2B-like
1 1 SCOP 110734 Glycosyl transferases group 1
1 1 SCOP 110902 FabZ-like
1 1 SCOP 111155 Porphyromonas-type peptidylarginine deiminase
1 1 SCOP 111219 ArgJ-like
1 1 SCOP 111227 Methyl parathion hydrolase
1 1 SCOP 111233 YfcE-like
1 1 SCOP 111238 YfiH-like
1 1 SCOP 111305 Recombination protein RecR
1 1 SCOP 111332 NAD kinase-like
1 1 SCOP 111338 QueA-like
1 1 SCOP 117144 Flagellar hook protein flgE
1 1 SCOP 117458 FumA C-terminal domain-like
1 1 SCOP 117888 Ribosomal protein L16p
1 1 SCOP 140991 FtsH protease domain-like
1 1 SCOP 141092 Ribosomal protein L21p
1 1 SCOP 141245 Ribosomal protein L19
1 1 SCOP 141368 UbiD middle domain-like
1 1 SCOP 141703 Atu2648/PH1033-like
1 1 SCOP 141735 HisI-like
1 1 SCOP 141968 Divergent polysaccharide deacetylase
1 1 SCOP 142434 CinA-like
1 1 SCOP 142635 hypothetical RNA methyltransferase
1 1 SCOP 142696 RibA-like
1 1 SCOP 142755 NadA-like
1 1 SCOP 143448 AMMECR1-like
1 1 SCOP 143598 YojJ-like
1 1 SCOP 143642 LplA-like
1 1 SCOP 143711 LFTR-like
1 1 SCOP 143812 GatB/GatE catalytic domain-like
1 1 SCOP 143906 Gamma-glutamyltranspeptidase-like
1 1 SCOP 143927 beta-CASP RNA-metabolising hydrolases
1 1 SCOP 143976 lvD/EDD N-terminal domain-like
1 1 SCOP 144031 Nq06-like
1 1 SCOP 144053 Thermophilic metalloprotease (M29)
1 1 SCOP 158600 MgsA/YrvN C-terminal domain-like
1 1 SCOP 158833 Tex N-terminal region-like
1 1 SCOP 159112 RNB domain-like
1 1 SCOP 159195 MLTA-like
1 1 SCOP 159436 HI0933 N-terminal domain-like
1 1 SCOP 159635 Tex RuvX-like domain-like
1 1 SCOP 159720 mannose-1-phosphate guanylyl transferase
1 1 SCOP 160370 Ribosomal protein L10-like
1 1 SCOP 160566 DVU1097-like
1 1 SCOP 160997 HI0933 insert domain-like
1 1 SCOP 161071 SNF-like
1 1 SCOP 161099 MetI-like
1 1 SCOP 161267 Gam-like

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The following families have one or more weak hits:

SCOP family Cation efflux protein transmembrane domain-like
SCOP family MgtE membrane domain-like
SCOP family CheD-like
SCOP family CorC/HlyC domain-like
SCOP family gpW/gp25-like
SCOP family EscU C-terminal domain-like
SCOP family V-type ATPase subunit E
SCOP family Smr domain
SCOP family NIL domain-like
SCOP family Iojap/YbeB-like
SCOP family GSPII protein E N-terminal domain-like
SCOP family Cation efflux protein cytoplasmic domain-like
SCOP family FlaG-like
SCOP family SEC-C associated NTF2-like domain
SCOP family XkdW-like
SCOP family YiiX-like
SCOP family NMB1012-like
SCOP family FdhD/NarQ
SCOP family FucT-like
SCOP family CbiG N-terminal domain-like
SCOP family CobE/GbiG C-terminal domain-like
SCOP family DhaM-like
SCOP family YaeQ-like
SCOP family XCC0632-like
SCOP family SorC sugar-binding domain-like
SCOP family DRTGG domain
SCOP family DR0824-like
SCOP family AlaX-M N-terminal domain-like
SCOP family HupF/HypC-like
SCOP family Trm112p-like
SCOP family MgtE N-terminal domain-like
SCOP family PSPTO4464-like
SCOP family Tex HhH-containing domain-like
SCOP family HAMP domain
SCOP family Ribosomal protein L33p
SCOP family Ribosomal protein L32p
SCOP family Rhomboid-like
SCOP family Magnesium transport protein CorA, transmembrane region
SCOP family FdhE-like
SCOP family UbiD C-terminal domain-like
SCOP family TM0894-like
SCOP family CorA soluble domain-like
SCOP family Ribosomal protein L31p
SCOP family Ribosomal protein L28
SCOP family BT0354 N-terminal domain-like
SCOP family GlcG-like
SCOP family YkuI C-terminal domain-like
SCOP family FwdE-like
SCOP family Serine dehydratase beta chain-like
SCOP family TRCF domain
SCOP family UTRA domain
SCOP family TTP0101/SSO1404-like
SCOP family BT0572-like
SCOP family Aspartokinase allosteric domain-like
SCOP family IlvH-like
SCOP family Nqo5-like
SCOP family Acyl-ACP thioesterase-like
SCOP family Ribosomal protein L35p
SCOP family NlpC/P60
SCOP family RibD C-terminal domain-like
SCOP family YhhF-like
SCOP family CoaX-like
SCOP family CofD-like
SCOP family YkgG-like
SCOP family Histidinol phosphatase-like
SCOP family IlvD/EDD C-terminal domain-like
SCOP family EAL domain
SCOP family L,D-transpeptidase catalytic domain-like
SCOP family BH3618-like
SCOP family PilZ domain-associated domain
SCOP family PilZ domain
SCOP family RimM N-terminal domain-like
SCOP family RimM C-terminal domain-like
SCOP family CarD-like
SCOP family Acetamidase/Formamidase-like
SCOP family CalX-beta domain
SCOP family Glu-tRNAGln amidotransferase C subunit
SCOP family Fic-like
SCOP family TyrA dimerization domain-like
SCOP family GatB/GatE C-terminal domain-like
SCOP family SP0561-like
SCOP family TTHA0068-like
SCOP family LcrE-like
SCOP family TyeA-like
SCOP family VCA0319-like
SCOP family ESAT-6 like
SCOP family HxlR-like
SCOP family FtsK C-terminal domain-like
SCOP family MxiH-like
SCOP family YaeB-like
SCOP family DNA mismatch repair protein MutL
SCOP family CYTH domain
SCOP family NifU C-terminal domain-like
SCOP family Band 7/SPFH domain
SCOP family YbjQ-like
SCOP family CsrA-like
SCOP family Hypothetical protein PA1324
SCOP family ProC C-terminal domain-like
SCOP family modified HD domain
SCOP family XseB-like
SCOP family TrkA C-terminal domain-like
SCOP family Prokaryotic DksA/TraR C4-type zinc finger
SCOP family OmpH-like
SCOP family Outer membrane protein transport protein
SCOP family CbiD-like
SCOP family AF1104-like
SCOP family H-NOX domain
SCOP family Sporulation related repeat
SCOP family PA3566-like
SCOP family HSP90 C-terminal domain
SCOP family 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
SCOP family ParB-like nuclease domain
SCOP family UbiE/COQ5-like
SCOP family YeaZ-like
SCOP family Glucokinase
SCOP family Methenyltetrahydrofolate synthetase
SCOP family Ribosomal L27 protein
SCOP family Serine acetyltransferase
SCOP family Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP family TF C-terminus
SCOP family Glutamine synthase adenylyltransferase GlnE, domain 2
SCOP family Conserved carboxylase domain
SCOP family KorB DNA-binding domain-like
SCOP family Heat-inducible transcription repressor HrcA, N-terminal domain
SCOP family DnaK suppressor protein DksA, alpha-hairpin domain
SCOP family Sec-C motif
SCOP family ClpX chaperone zinc binding domain
SCOP family Respiratory nitrate reductase 1 gamma chain
SCOP family Preprotein translocase SecY subunit
SCOP family Multidrug resistance efflux transporter EmrE
SCOP family Hypothetical protein PH1602
SCOP family TT1561-like
SCOP family Hypothetical protein TM0207
SCOP family TT1751-like
SCOP family Sensory domain of two-component sensor kinase
SCOP family Predicted metal-dependent hydrolase
SCOP family CheC-like
SCOP family Nickel responsive regulator NikR, C-terminal domain
SCOP family Cell division protein ZapA-like
SCOP family Imidazole glycerol phosphate dehydratase
SCOP family Trigger factor ribosome-binding domain
SCOP family NIF3 (NGG1p interacting factor 3)-like
SCOP family (Uracil-5-)-methyltransferase
SCOP family Bacterial fluorinating enzyme, N-terminal domain
SCOP family N-acetylmuramoyl-L-alanine amidase-like
SCOP family Putative Holliday junction resolvase RuvX
SCOP family Peptidyl-tRNA hydrolase II
SCOP family Putative cyclase
SCOP family Transcriptional repressor Rex, C-terminal domain
SCOP family Oxygen-independent coproporphyrinogen III oxidase HemN
SCOP family Hypothetical protein MraZ
SCOP family Peptidoglycan hydrolase LytM
SCOP family Stabilizer of iron transporter SufD
SCOP family YceI-like
SCOP family Bacterial fluorinating enzyme, C-terminal domain
SCOP family MOSC (MOCO sulphurase C-terminal) domain
SCOP family Aminomethyltransferase beta-barrel domain
SCOP family TRAM domain
SCOP family Anti-sigma factor FlgM
SCOP family ADP-ribosylglycohydrolase
SCOP family CMD-like
SCOP family Flagellar export chaperone FliS
SCOP family FUR-like
SCOP family Transcriptional repressor Rex, N-terminal domain
SCOP family CopG-like
SCOP family Isochorismatase-like hydrolases
SCOP family Heat shock protein 70kD (HSP70), C-terminal subdomain
SCOP family FIS-like
SCOP family Lesion bypass DNA polymerase (Y-family), little finger domain
SCOP family Myosin rod fragments
SCOP family 2'-5' RNA ligase LigT
SCOP family YajQ-like
SCOP family MTH1187-like
SCOP family DUF190/COG1993
SCOP family PaaI/YdiI-like
SCOP family UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
SCOP family ADP-heptose LPS heptosyltransferase II
SCOP family YggJ C-terminal domain-like
SCOP family TAP-like
SCOP family RraA-like
SCOP family NodB-like polysaccharide deacetylase
SCOP family PHP domain
SCOP family Glycerophosphoryl diester phosphodiesterase
SCOP family HMGL-like
SCOP family YggJ N-terminal domain-like
SCOP family YhcH-like
SCOP family TM1287-like
SCOP family Outer-membrane lipoproteins carrier protein LolA
SCOP family HesB-like domain
SCOP family TorD-like
SCOP family LysR-like transcriptional regulators
SCOP family Receptor-binding domain of short tail fibre protein gp12
SCOP family Protein kinases, catalytic subunit
SCOP family SirA-like
SCOP family ATP phosphoribosyltransferase (ATP-PRTase, HisG), regulatory C-terminal domain
SCOP family Alanine racemase
SCOP family Sigma4 domain
SCOP family Sigma3 domain
SCOP family Mechanosensitive channel protein MscS (YggB), transmembrane region
SCOP family GIY-YIG endonuclease
SCOP family Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
SCOP family R3H domain
SCOP family Mechanosensitive channel protein MscS (YggB), C-terminal domain
SCOP family N-utilization substance G protein NusG, N-terminal domain
SCOP family Poly A polymerase head domain-like
SCOP family Adaptor protein ClpS (YljA)
SCOP family YbaB-like
SCOP family DegV-like
SCOP family MraW-like putative methyltransferases
SCOP family Precorrin-6Y methyltransferase (CbiT)
SCOP family YbeA-like
SCOP family PP-loop ATPase
SCOP family Shikimate dehydrogenase-like
SCOP family SAH/MTA deaminase-like
SCOP family SAH/MTA deaminase-like
SCOP family ATP-dependent riboflavin kinase-like
SCOP family Heme chaperone CcmE
SCOP family Mechanosensitive channel protein MscS (YggB), middle domain
SCOP family N-utilization substance G protein NusG, C-terminal domain
SCOP family HCP-like
SCOP family Poly A polymerase C-terminal region-like
SCOP family Porin chaperone SurA, peptide-binding domain
SCOP family Putative methyltransferase TM0872, insert domain
SCOP family Chromosomal replication initiation factor DnaA C-terminal domain IV
SCOP family Calcium ATPase, transmembrane domain M
SCOP family Metal cation-transporting ATPase, ATP-binding domain N
SCOP family Calcium ATPase, transduction domain A
SCOP family C-terminal, Zn-finger domain of MutM-like DNA repair proteins
SCOP family Middle domain of MutM-like DNA repair proteins
SCOP family N-terminal domain of MutM-like DNA repair proteins
SCOP family F1F0 ATP synthase subunit B, membrane domain
SCOP family Cytochrome c oxidase subunit II-like, transmembrane region
SCOP family Cytochrome c oxidase subunit III-like
SCOP family F1F0 ATP synthase subunit A
SCOP family F1F0 ATP synthase subunit C
SCOP family Gated mechanosensitive channel
SCOP family Voltage-gated potassium channels
SCOP family E-set domains of sugar-utilizing enzymes
SCOP family Chemotaxis phosphatase CheZ
SCOP family Siroheme synthase middle domains-like
SCOP family Gyrase inhibitory protein GyrI (SbmC, YeeB)
SCOP family YhbC-like, N-terminal domain
SCOP family Glucose-inhibited division protein B (GidB)
SCOP family YjeE-like
SCOP family beta-Phosphoglucomutase-like
SCOP family DsrEF-like
SCOP family Siroheme synthase N-terminal domain-like
SCOP family C-terminal fragment of elongation factor SelB
SCOP family Thymidylate synthase-complementing protein Thy1
SCOP family YggU-like
SCOP family Ribosome binding protein Y (YfiA homologue)
SCOP family Glutamyl tRNA-reductase catalytic, N-terminal domain
SCOP family Type III secretory system chaperone
SCOP family HemD-like
SCOP family Molybdenum cofactor biosynthesis protein MoeB
SCOP family Probable phosphatase YrbI
SCOP family Alpha subunit of glutamate synthase, C-terminal domain
SCOP family gp4 N-terminal domain-like
SCOP family Glutamyl tRNA-reductase dimerization domain
SCOP family 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
SCOP family Lrp/AsnC-like transcriptional regulator N-terminal domain
SCOP family Rho termination factor, N-terminal domain
SCOP family Carbamilase
SCOP family Holo-(acyl carrier protein) synthase ACPS
SCOP family YlxR-like
SCOP family IPP isomerase-like
SCOP family YjeF N-terminal domain-like
SCOP family MoeA central domain-like
SCOP family Potassium channel NAD-binding domain
SCOP family MoeA C-terminal domain-like
SCOP family ATP sulfurylase N-terminal domain
SCOP family Riboflavin synthase
SCOP family Chemotaxis protein CheA P1 domain
SCOP family TS-N domain
SCOP family MurE/MurF N-terminal domain
SCOP family Ferredoxin reductase FAD-binding domain-like
SCOP family MarR-like transcriptional regulators
SCOP family N-terminal coiled coil domain from apc
SCOP family Coiled-coil domain of nucleotide exchange factor GrpE
SCOP family Tropomyosin
SCOP family DnaJ/Hsp40 cysteine-rich domain
SCOP family Ada DNA repair protein, N-terminal domain (N-Ada 10)
SCOP family Ribosomal protein L36
SCOP family Desulforedoxin
SCOP family DNA primase zinc finger
SCOP family Ribosomal protein S14
SCOP family Ferredoxin thioredoxin reductase (FTR), catalytic beta chain
SCOP family Fumarate reductase respiratory complex cytochrome b subunit, FrdC
SCOP family Major capsid protein gp5
SCOP family Insert subdomain of RNA polymerase alpha subunit
SCOP family Penicillin binding protein dimerisation domain
SCOP family Glyoxalase II (hydroxyacylglutathione hydrolase)
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
SCOP family Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain
SCOP family FAD-linked oxidases, N-terminal domain
SCOP family Pyruvate phosphate dikinase, N-terminal domain
SCOP family Succinyl-CoA synthetase, beta-chain, N-terminal domain
SCOP family Nuclease
SCOP family DNA polymerase III, beta subunit
SCOP family Phosphoglucomutase, C-terminal domain
SCOP family YrdC-like
SCOP family MutT-like
SCOP family IIA domain of mannitol-specific and ntr phosphotransferase EII
SCOP family Heme-binding PAS domain
SCOP family GAF domain
SCOP family Biotin holoenzyme synthetase
SCOP family Ribosomal protein L9 N-domain
SCOP family Ribosomal protein L9 C-domain
SCOP family 6-pyruvoyl tetrahydropterin synthase
SCOP family HPr-like
SCOP family NADH oxidase/flavin reductase
SCOP family FAD/NAD-linked reductases, dimerisation (C-terminal) domain
SCOP family Homoserine dehydrogenase-like
SCOP family GAD domain
SCOP family RNA polymerase alpha subunit dimerisation domain
SCOP family TolA
SCOP family Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
SCOP family Ribosomal protein L30p/L7e
SCOP family Probable ACP-binding domain of malonyl-CoA ACP transacylase
SCOP family Bacterial exopeptidase dimerisation domain
SCOP family HMA, heavy metal-associated domain
SCOP family Ribosomal protein S6
SCOP family Anticodon-binding domain of PheRS
SCOP family Acylphosphatase-like
SCOP family Canonical RBD
SCOP family Single 4Fe-4S cluster ferredoxin
SCOP family GroEL-like chaperone, intermediate domain
SCOP family Eukaryotic type KH-domain (KH-domain type I)
SCOP family Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
SCOP family Ribosomal S5 protein, N-terminal domain
SCOP family Double-stranded RNA-binding domain (dsRBD)
SCOP family RecA protein, C-terminal domain
SCOP family Molybdopterin synthase subunit MoaE
SCOP family NadC N-terminal domain-like
SCOP family 4HBT-like
SCOP family Ribosomal protein S16
SCOP family GreA transcript cleavage factor, C-terminal domain
SCOP family Pilin
SCOP family Diaminopimelate epimerase
SCOP family Glutamine synthetase, N-terminal domain
SCOP family Translation initiation factor IF3, N-terminal domain
SCOP family ThiS
SCOP family GHMP Kinase, N-terminal domain
SCOP family RNase P protein
SCOP family HIT (HINT, histidine triad) family of protein kinase-interacting proteins
SCOP family L23p
SCOP family Penicillin-binding protein 2x (pbp-2x), c-terminal domain
SCOP family LysM domain
SCOP family Bacterial muramidase, catalytic domain
SCOP family Oligosaccharide phosphorylase
SCOP family UDP-N-acetylglucosamine 2-epimerase
SCOP family AraD-like aldolase/epimerase
SCOP family Folylpolyglutamate synthetase
SCOP family Ribokinase-like
SCOP family A novel bacterial esterase
SCOP family Molybdenum cofactor biosynthesis protein MobA
SCOP family Spore coat polysaccharide biosynthesis protein SpsA
SCOP family Type II DNA methylase
SCOP family RNA methyltransferase FtsJ
SCOP family Integrin A (or I) domain
SCOP family 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain
SCOP family Folylpolyglutamate synthetase, C-terminal domain
SCOP family Aminoacid dehydrogenases
SCOP family MogA-like
SCOP family Hydrogenase maturating endopeptidase HybD
SCOP family Methylated DNA-protein cysteine methyltransferase domain
SCOP family DNA repair protein MutS, domain II
SCOP family MTH1175-like
SCOP family DnaQ-like 3'-5' exonuclease
SCOP family EIIA-man component-like
SCOP family 5' to 3' exonuclease catalytic domain
SCOP family gamma,delta resolvase, catalytic domain
SCOP family TolB, N-terminal domain
SCOP family Anticodon-binding domain of Class II aaRS
SCOP family Leucine aminopeptidase (Aminopeptidase A), N-terminal domain
SCOP family Pyruvate kinase, C-terminal domain
SCOP family Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain
SCOP family Thioredoxin-like 2Fe-2S ferredoxin
SCOP family PDI-like
SCOP family Thioltransferase
SCOP family Dual specificity phosphatase-like
SCOP family PTS IIb component
SCOP family 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
SCOP family NagB-like
SCOP family D-Alanine ligase N-terminal domain
SCOP family Universal stress protein-like
SCOP family Cryptochrome/photolyase, N-terminal domain
SCOP family UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
SCOP family Cytidylyltransferase
SCOP family Dihydroorotate dehydrogenase B, PyrK subunit
SCOP family Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain
SCOP family Formate/glycerate dehydrogenases, substrate-binding domain
SCOP family Cobalamin (vitamin B12)-binding domain
SCOP family Initiation factor IF2/eIF5b, domain 3
SCOP family DNA ligase
SCOP family Anti-sigma factor antagonist SpoIIaa
SCOP family N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
SCOP family Class III anaerobic ribonucleotide reductase NRDD subunit
SCOP family R1 subunit of ribonucleotide reductase, C-terminal domain
SCOP family N-terminal domain of adrenodoxin reductase-like
SCOP family FAD/NAD-linked reductases, N-terminal and central domains
SCOP family FAD-linked reductases, N-terminal domain
SCOP family Methyltetrahydrofolate-utiluzing methyltransferases
SCOP family Pyruvate phosphate dikinase, C-terminal domain
SCOP family Aldo-keto reductases (NADP)
SCOP family "Hypothetical" protein ybl036c
SCOP family Epsilon subunit of F1F0-ATP synthase N-terminal domain
SCOP family LexA-related
SCOP family Head decoration protein D (gpD, major capsid protein D)
SCOP family AFP III-like domain
SCOP family Cytochrome f, small domain
SCOP family BC C-terminal domain-like
SCOP family Regulatory protein AraC
SCOP family cAMP-binding domain
SCOP family CO-sensing protein CooA, N-terminal domain
SCOP family Galactoside acetyltransferase-like
SCOP family Serralysin-like metalloprotease, C-terminal domain
SCOP family Head domain of nucleotide exchange factor GrpE
SCOP family alpha-Amylases, C-terminal beta-sheet domain
SCOP family Pyruvate kinase beta-barrel domain
SCOP family Ribosomal protein L25-like
SCOP family mu transposase, C-terminal domain
SCOP family Post formyltransferase domain
SCOP family NADH:FMN oxidoreductase-like
SCOP family CheW-like
SCOP family ABC-transporter additional domain
SCOP family DNA ligase/mRNA capping enzyme postcatalytic domain
SCOP family Myf domain
SCOP family DNA helicase RuvA subunit, N-terminal domain
SCOP family Staphylococcal nuclease
SCOP family Alcohol dehydrogenase-like, N-terminal domain
SCOP family eIF5a N-terminal domain-like
SCOP family Ribosomal proteins L24p and L21e
SCOP family FeoA-like
SCOP family Biotin repressor (BirA)
SCOP family HSP20
SCOP family Multidomain cupredoxins
SCOP family Periplasmic domain of cytochrome c oxidase subunit II
SCOP family HSP40/DnaJ peptide-binding domain
SCOP family Aromatic compound dioxygenase
SCOP family Dimeric chorismate mutase
SCOP family Tetracyclin repressor-like, C-terminal domain
SCOP family Tetratricopeptide repeat (TPR)
SCOP family Ribosomal protein L7/12, oligomerisation (N-terminal) domain
SCOP family UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
SCOP family Cryptochrome/photolyase FAD-binding domain
SCOP family R1 subunit of ribonucleotide reductase, N-terminal domain
SCOP family C-terminal domain of glutamyl-tRNA synthetase (GluRS)
SCOP family Carbamoyl phosphate synthetase, large subunit connection domain
SCOP family Antitermination factor NusB
SCOP family GntR ligand-binding domain-like
SCOP family N-terminal domain of the delta subunit of the F1F0-ATP synthase
SCOP family Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP family lambda integrase-like, N-terminal domain
SCOP family 5' to 3' exonuclease, C-terminal subdomain
SCOP family C-terminal domain of RNA polymerase alpha subunit
SCOP family NAD+-dependent DNA ligase, domain 3
SCOP family DNA helicase RuvA subunit, middle domain
SCOP family Chemotaxis receptor methyltransferase CheR, N-terminal domain
SCOP family Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
SCOP family Methionine synthase domain
SCOP family SinR domain-like
SCOP family Homodimeric domain of signal transducing histidine kinase
SCOP family Domain of the SRP/SRP receptor G-proteins
SCOP family Acyl-carrier protein (ACP)
SCOP family Hemerythrin-like
SCOP family Ribosomal protein S20
SCOP family DNA-binding N-terminal domain of transcription activators
SCOP family Domains B1 and B5 of PheRS-beta, PheT
SCOP family DNA helicase RuvA subunit, C-terminal domain
SCOP family Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
SCOP family Ribosomal protein S18
SCOP family GerE-like (LuxR/UhpA family of transcriptional regulators)
SCOP family PhoB-like
SCOP family Excisionase-like
SCOP family Helicase DNA-binding domain
SCOP family ArsR-like transcriptional regulators
SCOP family CAP C-terminal domain-like
SCOP family Biotin repressor-like
SCOP family Tetracyclin repressor-like, N-terminal domain
SCOP family AraC type transcriptional activator
SCOP family Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP family C-terminal UvrC-binding domain of UvrB
SCOP family Phenylalanyl-tRNA synthetase (PheRS)
SCOP family Seryl-tRNA synthetase (SerRS)
SCOP family Chaperone J-domain
SCOP family Ribosomal protein L29 (L29p)
SCOP family GreA transcript cleavage protein, N-terminal domain
SCOP family Dihydropyrimidine dehydrogenase, N-terminal domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.