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Lactococcus lactis subsp. lactis Il1403 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; Terrabacteria group; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus; Lactococcus lactis; Lactococcus lactis subsp. lactis; Lactococcus lactis subsp. lactis Il1403

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Fasta format sequences
Domain assignments


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Assignment statistics

Sequences: 2321 total
1562 (67 %) with assignment
289 average length
65 % amino acid coverage
Domains: 2195 total
563 unique superfamilies
449 unique families
277 average length
3.9 average superfamily size
74 % formed by duplication
Domain combinations: 329 domain pairs
751 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies

170 144 55 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
61 61 14 6 SCOP 51735 NAD(P)-binding Rossmann-fold domains
59 51 8 1 SCOP 46689 Homeodomain-like
53 52 22 1 SCOP 46785 "Winged helix" DNA-binding domain
47 47 6 3 SCOP 53098 Ribonuclease H-like
44 35 23 3 SCOP 50249 Nucleic acid-binding proteins
33 33 5 0 SCOP 47413 lambda repressor-like DNA-binding domains
30 28 6 1 SCOP 103473 MFS general substrate transporter
29 29 5 5 SCOP 56784 HAD-like
29 28 8 1 SCOP 53850 Periplasmic binding protein-like II
27 27 2 1 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
25 25 8 8 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
23 20 12 3 SCOP 51905 FAD/NAD(P)-binding domain
23 23 9 5 SCOP 51445 (Trans)glycosidases
22 13 6 4 SCOP 53067 Actin-like ATPase domain
22 12 6 8 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
20 20 6 1 SCOP 161098 MetI-like
19 17 11 7 SCOP 54211 Ribosomal protein S5 domain 2-like
18 18 12 3 SCOP 52374 Nucleotidylyl transferase
17 17 4 2 SCOP 53448 Nucleotide-diphospho-sugar transferases
17 17 1 4 SCOP 53383 PLP-dependent transferases
16 16 4 1 SCOP 53474 alpha/beta-Hydrolases
16 15 4 2 SCOP 52833 Thioredoxin-like
15 15 7 2 SCOP 52402 Adenine nucleotide alpha hydrolases-like
15 15 12 2 SCOP 55681 Class II aaRS and biotin synthetases
15 15 3 4 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
13 12 5 2 SCOP 53271 PRTase-like
12 11 5 3 SCOP 100950 NagB/RpiA/CoA transferase-like
12 12 2 1 SCOP 55811 Nudix
12 12 3 0 SCOP 90123 ABC transporter transmembrane region
11 11 6 2 SCOP 52317 Class I glutamine amidotransferase-like
11 11 3 3 SCOP 53697 SIS domain
11 9 9 0 SCOP 55021 ACT-like
10 10 4 1 SCOP 56300 Metallo-dependent phosphatases
10 9 8 2 SCOP 50447 Translation proteins
10 3 3 0 SCOP 49478 Cna protein B-type domain
10 10 5 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
10 10 3 0 SCOP 56349 DNA breaking-rejoining enzymes
10 10 8 1 SCOP 53955 Lysozyme-like
10 10 2 4 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
10 10 2 3 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
9 9 2 3 SCOP 51161 Trimeric LpxA-like enzymes
9 9 4 1 SCOP 102114 Radical SAM enzymes
9 9 5 1 SCOP 109604 HD-domain/PDEase-like
9 9 5 1 SCOP 54001 Cysteine proteinases
9 9 3 1 SCOP 53822 Periplasmic binding protein-like I
9 5 2 2 SCOP 53901 Thiolase-like
9 9 3 1 SCOP 81665 Calcium ATPase, transmembrane domain M
9 9 3 0 SCOP 81653 Calcium ATPase, transduction domain A
8 7 5 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
8 8 2 4 SCOP 51569 Aldolase
8 8 2 5 SCOP 51366 Ribulose-phoshate binding barrel
8 8 4 3 SCOP 55120 Pseudouridine synthase
8 8 4 1 SCOP 55174 Alpha-L RNA-binding motif
8 8 4 3 SCOP 74650 Galactose mutarotase-like
8 8 8 1 SCOP 56601 beta-lactamase/transpeptidase-like
8 8 4 0 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
8 2 2 0 SCOP 49401 Bacterial adhesins
8 5 4 1 SCOP 54980 EF-G C-terminal domain-like
8 4 3 0 SCOP 54106 LysM domain
7 7 1 2 SCOP 53613 Ribokinase-like
7 7 2 3 SCOP 53633 Carbamate kinase-like
7 7 3 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
7 7 2 1 SCOP 51395 FMN-linked oxidoreductases
7 7 5 2 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
7 7 2 1 SCOP 52172 CheY-like
7 7 2 0 SCOP 46955 Putative DNA-binding domain
7 6 6 1 SCOP 47781 RuvA domain 2-like
7 6 4 1 SCOP 52440 PreATP-grasp domain
6 6 2 0 SCOP 52218 Flavoproteins
6 6 2 2 SCOP 82549 DAK1/DegV-like
6 6 3 4 SCOP 75217 alpha/beta knot
6 6 2 1 SCOP 50129 GroES-like
6 6 2 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
6 6 2 1 SCOP 53187 Zn-dependent exopeptidases
6 6 2 1 SCOP 55469 FMN-dependent nitroreductase-like
6 6 5 1 SCOP 54631 CBS-domain pair
6 6 2 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
6 4 3 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
6 5 3 1 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
6 6 2 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
6 6 4 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
5 5 5 5 SCOP 51556 Metallo-dependent hydrolases
5 5 3 3 SCOP 53927 Cytidine deaminase-like
5 5 4 2 SCOP 50104 Translation proteins SH3-like domain
5 5 4 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
5 5 3 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
5 5 3 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
5 5 1 3 SCOP 52096 ClpP/crotonase
5 5 1 1 SCOP 53254 Phosphoglycerate mutase-like
5 5 1 1 SCOP 51430 NAD(P)-linked oxidoreductase
5 5 1 1 SCOP 52499 Isochorismatase-like hydrolases
5 5 3 3 SCOP 81301 Nucleotidyltransferase
5 5 1 1 SCOP 52467 DHS-like NAD/FAD-binding domain
5 3 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
5 4 4 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
5 5 3 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
5 5 2 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
5 5 3 3 SCOP 52922 TK C-terminal domain-like
5 5 1 1 SCOP 55060 GHMP Kinase, C-terminal domain
5 5 1 1 SCOP 55031 Bacterial exopeptidase dimerisation domain
4 4 2 1 SCOP 81338 Aquaporin-like
4 4 1 0 SCOP 57829 Zn-binding ribosomal proteins
4 4 2 1 SCOP 56112 Protein kinase-like (PK-like)
4 4 1 1 SCOP 111331 NAD kinase/diacylglycerol kinase-like
4 4 2 1 SCOP 55920 Creatinase/aminopeptidase
4 4 3 2 SCOP 64182 DHH phosphoesterases
4 4 1 3 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
4 4 4 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
4 4 3 1 SCOP 51261 Duplicated hybrid motif
4 4 1 0 SCOP 51283 dUTPase-like
4 4 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
4 4 1 0 SCOP 50475 FMN-binding split barrel
4 4 1 1 SCOP 56801 Acetyl-CoA synthetase-like
4 4 3 1 SCOP 50891 Cyclophilin-like
4 4 4 2 SCOP 49785 Galactose-binding domain-like
4 4 3 2 SCOP 48208 Six-hairpin glycosidases
4 4 3 1 SCOP 88713 Glycoside hydrolase/deacetylase
4 4 2 0 SCOP 52266 SGNH hydrolase
4 4 4 4 SCOP 51998 PFL-like glycyl radical enzymes
4 4 2 1 SCOP 53807 "Helical backbone" metal receptor
4 3 3 0 SCOP 51230 Single hybrid motif
4 3 3 0 SCOP 50037 C-terminal domain of transcriptional repressors
4 4 2 2 SCOP 51604 Enolase C-terminal domain-like
4 2 1 0 SCOP 56024 Phospholipase D/nuclease
4 4 2 1 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
4 4 2 1 SCOP 51246 Rudiment single hybrid motif
4 4 2 2 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
4 4 2 1 SCOP 56719 Type II DNA topoisomerase
4 2 1 1 SCOP 53681 Aspartate/glutamate racemase
4 4 2 0 SCOP 51011 Glycosyl hydrolase domain
4 4 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
4 4 1 0 SCOP 81660 Metal cation-transporting ATPase, ATP-binding domain N
4 4 2 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
3 3 1 1 SCOP 53167 Purine and uridine phosphorylases
3 3 2 1 SCOP 54197 HIT-like
3 3 2 1 SCOP 53597 Dihydrofolate reductase-like
3 3 2 0 SCOP 51695 PLC-like phosphodiesterases
3 3 3 1 SCOP 52980 Restriction endonuclease-like
3 3 1 1 SCOP 82784 OsmC-like
3 3 2 2 SCOP 53720 ALDH-like
3 3 2 3 SCOP 48150 DNA-glycosylase
3 3 3 1 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
3 3 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
3 3 1 1 SCOP 55205 EPT/RTPC-like
3 3 1 1 SCOP 48576 Terpenoid synthases
3 3 2 2 SCOP 56796 Dehydroquinate synthase-like
3 3 2 1 SCOP 51419 PLP-binding barrel
3 3 2 0 SCOP 55315 L30e-like
3 3 3 2 SCOP 56672 DNA/RNA polymerases
3 2 2 1 SCOP 51726 UROD/MetE-like
3 3 2 1 SCOP 56322 ADC synthase
3 3 2 0 SCOP 51306 LexA/Signal peptidase
3 3 1 2 SCOP 51182 RmlC-like cupins
3 3 2 0 SCOP 110849 ParB/Sulfiredoxin
3 3 2 0 SCOP 55008 HMA, heavy metal-associated domain
3 3 2 0 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
3 3 3 1 SCOP 52954 Class II aaRS ABD-related
3 3 2 1 SCOP 102405 MCP/YpsA-like
3 3 3 1 SCOP 52016 LeuD/IlvD-like
3 3 3 0 SCOP 57783 Zinc beta-ribbon
3 3 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
3 3 3 0 SCOP 88697 PUA domain-like
3 3 2 0 SCOP 55826 YbaK/ProRS associated domain
3 3 2 0 SCOP 55604 Glucose permease domain IIB
3 3 3 1 SCOP 55804 Phoshotransferase/anion transport protein
3 3 2 2 SCOP 50814 Lipocalins
3 3 3 1 SCOP 101473 DhaL-like
3 3 1 0 SCOP 56563 Major capsid protein gp5
3 3 2 0 SCOP 53092 Creatinase/prolidase N-terminal domain
3 3 2 0 SCOP 46589 tRNA-binding arm
3 3 1 0 SCOP 143865 CorA soluble domain-like
3 1 1 0 SCOP 55979 DNA clamp
3 3 2 1 SCOP 56176 FAD-binding/transporter-associated domain-like
3 2 2 1 SCOP 63520 PTS-regulatory domain, PRD
3 3 1 1 SCOP 159121 BC4932-like
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
3 3 2 1 SCOP 69360 Cell wall binding repeat
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
3 3 2 1 SCOP 158560 BH3980-like
3 3 3 1 SCOP 56037 PheT/TilS domain
3 3 1 1 SCOP 54826 Enolase N-terminal domain-like
3 2 2 1 SCOP 56042 PurM C-terminal domain-like
3 2 2 1 SCOP 63380 Riboflavin synthase domain-like
3 3 3 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
3 2 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 1 1 SCOP 56327 LDH C-terminal domain-like
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 1 1 0 SCOP 53738 Phosphoglucomutase, first 3 domains
3 3 3 1 SCOP 81271 TGS-like
2 2 2 0 SCOP 48013 NusB-like
2 2 1 1 SCOP 52141 Uracil-DNA glycosylase-like
2 2 1 1 SCOP 75304 Amidase signature (AS) enzymes
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 2 SCOP 46946 S13-like H2TH domain
2 2 1 2 SCOP 47240 Ferritin-like
2 2 1 2 SCOP 51658 Xylose isomerase-like
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 0 SCOP 47336 ACP-like
2 2 2 1 SCOP 82649 SufE/NifU
2 2 1 1 SCOP 47729 IHF-like DNA-binding proteins
2 2 2 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
2 2 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 1 SCOP 48557 L-aspartase-like
2 2 2 2 SCOP 55821 YrdC/RibB
2 2 2 0 SCOP 54862 4Fe-4S ferredoxins
2 1 1 0 SCOP 48452 TPR-like
2 2 1 0 SCOP 48371 ARM repeat
2 2 2 1 SCOP 81296 E set domains
2 2 1 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
2 2 2 1 SCOP 88723 PIN domain-like
2 2 2 1 SCOP 53328 Formyltransferase
2 2 2 1 SCOP 54534 FKBP-like
2 2 2 1 SCOP 53649 Alkaline phosphatase-like
2 2 2 0 SCOP 54427 NTF2-like
2 2 2 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
2 2 2 1 SCOP 49899 Concanavalin A-like lectins/glucanases
2 2 2 0 SCOP 51126 Pectin lyase-like
2 2 2 1 SCOP 55781 GAF domain-like
2 2 2 1 SCOP 52151 FabD/lysophospholipase-like
2 2 1 2 SCOP 55909 Pentein
2 2 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
2 2 1 0 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
2 2 2 2 SCOP 55931 Glutamine synthetase/guanido kinase
2 2 2 0 SCOP 144091 Rhomboid-like
2 2 1 0 SCOP 69118 AhpD-like
2 2 1 0 SCOP 81324 Voltage-gated potassium channels
2 2 1 0 SCOP 54909 Dimeric alpha+beta barrel
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 2 1 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
2 2 2 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
2 2 2 0 SCOP 89550 PHP domain-like
2 2 2 1 SCOP 81340 Clc chloride channel
2 2 1 0 SCOP 51206 cAMP-binding domain-like
2 2 1 1 SCOP 117856 AF0104/ALDC/Ptd012-like
2 2 2 1 SCOP 53732 Aconitase iron-sulfur domain
2 1 1 0 SCOP 116734 DNA methylase specificity domain
2 2 2 1 SCOP 69065 RNase III domain-like
2 2 1 1 SCOP 56219 DNase I-like
2 2 1 0 SCOP 103084 Holliday junction resolvase RusA
2 2 2 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
2 2 2 0 SCOP 101386 all-alpha NTP pyrophosphatases
2 2 2 1 SCOP 52335 Methylglyoxal synthase-like
2 2 2 1 SCOP 143631 ApbE-like
2 2 1 0 SCOP 158622 YheA/YmcA-like
2 2 2 0 SCOP 75138 HprK N-terminal domain-like
2 2 1 1 SCOP 64288 Chorismate lyase-like
2 2 2 1 SCOP 53062 PTS system fructose IIA component-like
2 2 2 0 SCOP 63817 Sortase
2 2 2 0 SCOP 50331 MOP-like
2 2 2 0 SCOP 55136 Probable bacterial effector-binding domain
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 46548 alpha-helical ferredoxin
2 2 2 0 SCOP 50156 PDZ domain-like
2 2 2 1 SCOP 52794 PTS system IIB component-like
2 2 1 0 SCOP 81923 Double Clp-N motif
2 1 1 0 SCOP 54403 Cystatin/monellin
2 1 1 0 SCOP 51971 Nucleotide-binding domain
2 2 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
2 2 2 0 SCOP 116726 TrkA C-terminal domain-like
2 2 2 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
2 2 2 1 SCOP 48334 DNA repair protein MutS, domain III
2 2 1 2 SCOP 50621 Alanine racemase C-terminal domain-like
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
2 2 1 0 SCOP 55252 C-terminal domain of arginine repressor
2 2 2 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
2 2 1 0 SCOP 63418 MurE/MurF N-terminal domain
2 2 1 0 SCOP 51984 MurCD N-terminal domain
2 2 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
2 2 2 1 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 54373 FAD-linked reductases, C-terminal domain
2 1 1 1 SCOP 56053 Ribosomal protein L6
2 2 2 0 SCOP 117892 Band 7/SPFH domain
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
2 1 1 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 1 1 1 SCOP 55666 Ribonuclease PH domain 2-like
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
2 2 2 1 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 1 SCOP 55594 HPr-like
1 1 1 0 SCOP 53790 Tetrapyrrole methylase
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 1 SCOP 81606 PP2C-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 1 SCOP 64376 YlxR-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 1 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 56214 4'-phosphopantetheinyl transferase
1 1 1 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 1 SCOP 141091 L21p-like
1 1 1 0 SCOP 118010 TM1457-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 0 SCOP 81333 F1F0 ATP synthase subunit C
1 1 1 1 SCOP 109755 PhoU-like
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 51316 Mss4-like
1 1 1 1 SCOP 51730 FAD-linked oxidoreductase
1 1 1 1 SCOP 54611 SecB-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 0 SCOP 89360 HesB-like domain
1 1 1 1 SCOP 111337 QueA-like
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 142695 RibA-like
1 1 1 0 SCOP 56655 Carbohydrate phosphatase
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 55298 YjgF-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 0 SCOP 50182 Sm-like ribonucleoproteins
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 48613 Heme oxygenase-like
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 47819 HRDC-like
1 1 1 1 SCOP 52972 ITPase-like
1 1 1 0 SCOP 161219 CHY zinc finger-like
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 55961 Bet v1-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 52058 L domain-like
1 1 1 0 SCOP 63562 RPB6/omega subunit-like
1 1 1 0 SCOP 53800 Chelatase
1 1 1 1 SCOP 141734 HisI-like
1 1 1 0 SCOP 52091 SpoIIaa-like
1 1 1 0 SCOP 51717 Dihydropteroate synthetase-like
1 1 1 1 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 141571 Pentapeptide repeat-like
1 1 1 1 SCOP 50494 Trypsin-like serine proteases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 0 SCOP 55331 Tautomerase/MIF
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 54523 Pili subunits
1 1 1 0 SCOP 82697 PurS-like
1 1 1 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
1 1 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 55166 Hedgehog/DD-peptidase
1 1 1 0 SCOP 53300 vWA-like
1 1 1 0 SCOP 117782 YbjQ-like
1 1 1 0 SCOP 55154 CYTH-like phosphatases
1 1 1 1 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 1 SCOP 110710 TTHA0583/YokD-like
1 1 1 1 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 0 SCOP 116842 XseB-like
1 1 1 0 SCOP 54736 ClpS-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 50800 PK beta-barrel domain-like
1 1 1 0 SCOP 69047 Hypothetical protein YjbJ
1 1 1 1 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 141694 AF2212/PG0164-like
1 1 1 0 SCOP 54975 Acylphosphatase/BLUF domain-like
1 1 1 1 SCOP 51391 Thiamin phosphate synthase
1 1 1 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
1 1 1 1 SCOP 89095 GatB/YqeY motif
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 48600 Chorismate mutase II
1 1 1 0 SCOP 56747 Prim-pol domain
1 1 1 0 SCOP 159888 YdhG-like
1 1 1 0 SCOP 159234 FomD-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 1 SCOP 53323 Pyruvate-ferredoxin oxidoreductase, PFOR, domain III
1 1 1 0 SCOP 55785 PYP-like sensor domain (PAS domain)
1 1 1 0 SCOP 140683 SP0561-like
1 1 1 1 SCOP 110738 Glycerate kinase I
1 1 1 1 SCOP 142338 CofD-like
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 52309 N-(deoxy)ribosyltransferase-like
1 1 1 0 SCOP 161266 Gam-like
1 1 1 0 SCOP 75471 YhbY-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 1 SCOP 110395 CutC-like
1 1 1 0 SCOP 142906 YjbR-like
1 1 1 1 SCOP 75005 Arabinanase/levansucrase/invertase
1 1 1 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 46565 Chaperone J-domain
1 1 1 1 SCOP 102546 RbsD-like
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 143437 THUMP domain-like
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 110455 Toprim domain
1 1 1 1 SCOP 52777 CoA-dependent acyltransferases
1 1 1 0 SCOP 48008 GntR ligand-binding domain-like
1 1 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
1 1 1 1 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 1 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
1 1 1 1 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 0 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
1 1 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
1 1 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 52728 PTS IIb component
1 1 1 0 SCOP 46973 Enzyme IIa from lactose specific PTS, IIa-lac
1 1 1 0 SCOP 55608 Homing endonucleases
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 1 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 0 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 0 SCOP 102645 CoaB-like
1 1 1 0 SCOP 118352 HSP33 redox switch-like
1 1 1 1 SCOP 142913 YktB/PF0168-like
1 1 1 0 SCOP 158221 YnzC-like
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 158379 YqgQ-like
1 1 1 0 SCOP 158504 BH2638-like
1 1 1 0 SCOP 143567 YkuJ-like
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 160419 YdfO-like
1 1 1 0 SCOP 55658 L9 N-domain-like
1 1 1 0 SCOP 140652 YozE-like
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
1 1 1 0 SCOP 158499 DnaD domain-like
1 1 1 0 SCOP 51215 Regulatory protein AraC
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 1 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 74748 Variable surface antigen VlsE
1 1 1 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 0 SCOP 51055 Carbohydrate binding domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 0 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 160964 MalF N-terminal region-like
1 1 1 0 SCOP 160800 Lp2179-like
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 49299 PKD domain
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
1 1 1 1 SCOP 81761 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal domain
1 1 1 0 SCOP 50151 SacY-like RNA-binding domain
1 1 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
1 1 1 0 SCOP 47831 Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
1 1 1 0 SCOP 74942 YhbC-like, C-terminal domain
1 1 1 1 SCOP 140121 SPy1572-like
1 1 1 1 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 1 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
1 1 1 0 SCOP 54680 Pyrimidine nucleoside phosphorylase C-terminal domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
1 1 1 0 SCOP 69189 Penicillin-binding protein associated domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 0 SCOP 47446 Signal peptide-binding domain
1 1 1 1 SCOP 56542 Substrate-binding domain of HMG-CoA reductase
1 1 1 1 SCOP 64397 Hsp33 domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 82708 R3H domain
1 1 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 88688 Families 57/38 glycoside transferase middle domain
1 1 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
1 1 1 1 SCOP 75553 Smc hinge domain
1 1 1 1 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 1 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 1 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 89000 post-HMGL domain-like
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 55035 NAD-binding domain of HMG-CoA reductase
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 1 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 1 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 1 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 102741 Obg GTP-binding protein C-terminal domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 1 SCOP 143856 DeoB insert domain-like
1 1 1 1 SCOP 160996 HI0933 insert domain-like

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily AbrB/MazE/MraZ-like
SCOP superfamily GAT-like domain
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily DPP6 N-terminal domain-like
SCOP superfamily a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
SCOP superfamily PsbU/PolX domain-like
SCOP superfamily Pheromone-binding domain of LuxR-like quorum-sensing transcription factors
SCOP superfamily Head-to-tail joining protein W, gpW
SCOP superfamily Telomeric repeat binding factor (TRF) dimerisation domain
SCOP superfamily BAG domain
SCOP superfamily RNA polymerase subunits
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Delta-sleep-inducing peptide immunoreactive peptide
SCOP superfamily Trimerization domain of TRAF
SCOP superfamily Cysteine-rich domain
SCOP superfamily RING/U-box
SCOP superfamily Rubredoxin-like
SCOP superfamily A heparin-binding domain
SCOP superfamily Monooxygenase (hydroxylase) regulatory protein
SCOP superfamily PCD-like
SCOP superfamily DLC
SCOP superfamily Colicin E3 immunity protein
SCOP superfamily MHC antigen-recognition domain
SCOP superfamily FucI/AraA N-terminal and middle domains
SCOP superfamily RNI-like
SCOP superfamily Peptidase/esterase 'gauge' domain
SCOP superfamily PH domain-like
SCOP superfamily STI-like
SCOP superfamily gp9
SCOP superfamily TNF-like
SCOP superfamily PEBP-like
SCOP superfamily Transglutaminase, two C-terminal domains
SCOP superfamily Fibronectin type III
SCOP superfamily Immunoglobulin
SCOP superfamily Multiheme cytochromes
SCOP superfamily Moesin tail domain
SCOP superfamily 14-3-3 protein
SCOP superfamily Protein prenylyltransferase
SCOP superfamily Sec7 domain
SCOP superfamily lambda integrase-like, N-terminal domain
SCOP superfamily t-snare proteins
SCOP superfamily SWIB/MDM2 domain
SCOP superfamily Apolipoprotein
SCOP superfamily Methane monooxygenase hydrolase, gamma subunit
SCOP superfamily T4 endonuclease V
SCOP superfamily Spectrin repeat
SCOP superfamily Epsilon subunit of F1F0-ATP synthase C-terminal domain
SCOP superfamily HR1 repeat
SCOP superfamily Prefoldin
SCOP superfamily Globin-like
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily SNF-like
SCOP superfamily Photosystem II reaction center protein K, PsbK
SCOP superfamily FLJ32549 C-terminal domain-like
SCOP superfamily BT0923-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily BLRF2-like
SCOP superfamily NSP3A-like
SCOP superfamily PSPTO4464-like
SCOP superfamily HAMP domain-like
SCOP superfamily Peptidoglycan deacetylase N-terminal noncatalytic region
SCOP superfamily L,D-transpeptidase pre-catalytic domain-like
SCOP superfamily NE0471 N-terminal domain-like
SCOP superfamily NAP-like
SCOP superfamily Agglutinin HPA-like
SCOP superfamily VPS28 C-terminal domain-like
SCOP superfamily Calcyclin-binding protein-like
SCOP superfamily Hypothetical protein MPN330
SCOP superfamily Geminin coiled-coil domain
SCOP superfamily Hemolytic lectin CEL-III, C-terminal domain
SCOP superfamily Oligoxyloglucan reducing end-specific cellobiohydrolase
SCOP superfamily DinB/YfiT-like putative metalloenzymes
SCOP superfamily Bacteriocin immunity protein-like
SCOP superfamily Sensory domain-like
SCOP superfamily Putative dsDNA mimic
SCOP superfamily JAB1/MPN domain
SCOP superfamily LmbE-like
SCOP superfamily Adhesin YadA, collagen-binding domain
SCOP superfamily DNA-binding pseudobarrel domain
SCOP superfamily C-terminal domain of Ku80
SCOP superfamily Superantigen MAM

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