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  Home > Genomes > Superfamily assignments for Dyadobacter fermentans DSM 18053


Dyadobacter fermentans DSM 18053 superfamily assignments

Taxonomy
Taxonomy browser entry

Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter; Dyadobacter fermentans; Dyadobacter fermentans DSM 18053

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Fasta format sequences
Domain assignments

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Assignment statistics

Sequences: 5719 total
3854 (67 %) with assignment
364 average length
59 % amino acid coverage
Domains: 5767 total
742 unique superfamilies
494 unique families
318 average length
7.8 average superfamily size
87 % formed by duplication
Domain combinations: 541 domain pairs
1351 unique architectures

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Superfamily assignments

Domains

Proteins

Architectures

Families

SCOP link

Superfamilies
234 199 64 8 SCOP 52540 P-loop containing nucleoside triphosphate hydrolases
195 194 25 8 SCOP 51735 NAD(P)-binding Rossmann-fold domains
165 165 13 1 SCOP 56935 Porins
154 154 12 0 SCOP 49464 Carboxypeptidase regulatory domain-like
153 143 40 1 SCOP 52172 CheY-like
158 142 21 1 SCOP 48452 TPR-like
137 113 33 0 SCOP 46689 Homeodomain-like
100 99 59 1 SCOP 55874 ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
95 95 21 0 SCOP 46785 "Winged helix" DNA-binding domain
76 76 5 0 SCOP 88946 Sigma2 domain of RNA polymerase sigma factors
75 75 12 5 SCOP 53474 alpha/beta-Hydrolases
74 73 3 0 SCOP 88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors
71 70 44 0 SCOP 47384 Homodimeric domain of signal transducing histidine kinase
64 64 6 3 SCOP 53448 Nucleotide-diphospho-sugar transferases
72 59 31 0 SCOP 46626 Cytochrome c
58 56 28 9 SCOP 51445 (Trans)glycosidases
53 51 19 1 SCOP 51905 FAD/NAD(P)-binding domain
53 51 12 4 SCOP 53335 S-adenosyl-L-methionine-dependent methyltransferases
48 48 8 0 SCOP 47413 lambda repressor-like DNA-binding domains
48 47 5 5 SCOP 53383 PLP-dependent transferases
44 44 4 3 SCOP 53756 UDP-Glycosyltransferase/glycogen phosphorylase
45 44 6 4 SCOP 55347 Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain
43 43 2 2 SCOP 51658 Xylose isomerase-like
42 41 8 1 SCOP 52833 Thioredoxin-like
39 39 22 2 SCOP 52317 Class I glutamine amidotransferase-like
39 39 8 2 SCOP 55729 Acyl-CoA N-acyltransferases (Nat)
38 37 4 0 SCOP 103473 MFS general substrate transporter
36 36 8 3 SCOP 53649 Alkaline phosphatase-like
36 35 11 0 SCOP 52266 SGNH hydrolase
35 35 5 0 SCOP 46894 C-terminal effector domain of the bipartite response regulators
43 34 24 3 SCOP 50249 Nucleic acid-binding proteins
52 34 26 0 SCOP 63829 Calcium-dependent phosphotriesterase
34 34 6 4 SCOP 51182 RmlC-like cupins
33 33 12 6 SCOP 48208 Six-hairpin glycosidases
30 30 20 1 SCOP 50952 Soluble quinoprotein glucose dehydrogenase
28 27 8 6 SCOP 51556 Metallo-dependent hydrolases
45 27 8 4 SCOP 53067 Actin-like ATPase domain
59 27 23 0 SCOP 55785 PYP-like sensor domain (PAS domain)
26 26 5 1 SCOP 56954 Outer membrane efflux proteins (OEP)
23 23 9 1 SCOP 56784 HAD-like
23 23 6 3 SCOP 53098 Ribonuclease H-like
31 23 18 2 SCOP 49785 Galactose-binding domain-like
23 23 10 2 SCOP 56601 beta-lactamase/transpeptidase-like
25 23 7 1 SCOP 111369 HlyD-like secretion proteins
22 22 8 1 SCOP 56300 Metallo-dependent phosphatases
22 22 11 1 SCOP 55486 Metalloproteases ("zincins"), catalytic domain
22 22 9 3 SCOP 53187 Zn-dependent exopeptidases
24 22 16 1 SCOP 48371 ARM repeat
23 22 4 2 SCOP 54593 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase
22 22 3 0 SCOP 54909 Dimeric alpha+beta barrel
44 22 10 1 SCOP 82866 Multidrug efflux transporter AcrB transmembrane domain
23 20 14 6 SCOP 54211 Ribosomal protein S5 domain 2-like
25 20 9 1 SCOP 51126 Pectin lyase-like
20 20 4 0 SCOP 51215 Regulatory protein AraC
19 19 5 5 SCOP 51569 Aldolase
19 19 3 1 SCOP 109854 DinB/YfiT-like putative metalloenzymes
20 19 11 1 SCOP 50998 Quinoprotein alcohol dehydrogenase-like
21 19 6 2 SCOP 75005 Arabinanase/levansucrase/invertase
38 19 8 0 SCOP 82714 Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains
57 19 8 1 SCOP 82693 Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
18 18 4 2 SCOP 55811 Nudix
19 18 13 0 SCOP 81296 E set domains
20 18 15 1 SCOP 55781 GAF domain-like
18 18 3 0 SCOP 55961 Bet v1-like
18 18 6 0 SCOP 51206 cAMP-binding domain-like
19 18 4 1 SCOP 48179 6-phosphogluconate dehydrogenase C-terminal domain-like
17 17 2 4 SCOP 47240 Ferritin-like
17 17 5 2 SCOP 56281 Metallo-hydrolase/oxidoreductase
20 17 7 4 SCOP 52096 ClpP/crotonase
17 17 10 0 SCOP 49899 Concanavalin A-like lectins/glucanases
17 17 7 1 SCOP 53822 Periplasmic binding protein-like I
20 17 6 0 SCOP 51338 Composite domain of metallo-dependent hydrolases
17 16 12 2 SCOP 56059 Glutathione synthetase ATP-binding domain-like
16 16 12 2 SCOP 52374 Nucleotidylyl transferase
17 16 6 2 SCOP 100950 NagB/RpiA/CoA transferase-like
16 16 3 3 SCOP 51161 Trimeric LpxA-like enzymes
16 16 4 3 SCOP 102114 Radical SAM enzymes
16 16 2 1 SCOP 88723 PIN domain-like
16 16 6 0 SCOP 54001 Cysteine proteinases
16 16 8 2 SCOP 81301 Nucleotidyltransferase
24 16 4 2 SCOP 53901 Thiolase-like
16 16 7 0 SCOP 51011 Glycosyl hydrolase domain
41 15 12 1 SCOP 69318 Integrin alpha N-terminal domain
20 14 6 5 SCOP 52518 Thiamin diphosphate-binding fold (THDP-binding)
17 14 10 3 SCOP 52402 Adenine nucleotide alpha hydrolases-like
14 14 6 0 SCOP 103088 OmpA-like
13 13 3 3 SCOP 53613 Ribokinase-like
13 13 2 1 SCOP 52980 Restriction endonuclease-like
13 13 3 1 SCOP 50129 GroES-like
13 13 11 2 SCOP 55681 Class II aaRS and biotin synthetases
13 13 7 5 SCOP 56235 N-terminal nucleophile aminohydrolases (Ntn hydrolases)
13 13 2 1 SCOP 54427 NTF2-like
13 13 1 1 SCOP 51197 Clavaminate synthase-like
13 13 3 1 SCOP 56349 DNA breaking-rejoining enzymes
13 13 3 2 SCOP 51604 Enolase C-terminal domain-like
13 13 8 0 SCOP 82171 DPP6 N-terminal domain-like
13 13 2 1 SCOP 90123 ABC transporter transmembrane region
13 13 5 0 SCOP 54373 FAD-linked reductases, C-terminal domain
12 12 2 1 SCOP 53597 Dihydrofolate reductase-like
12 12 3 1 SCOP 54637 Thioesterase/thiol ester dehydrase-isomerase
12 12 2 1 SCOP 54826 Enolase N-terminal domain-like
12 11 7 1 SCOP 53850 Periplasmic binding protein-like II
11 11 1 2 SCOP 53720 ALDH-like
11 11 6 0 SCOP 54292 2Fe-2S ferredoxin-like
12 11 3 0 SCOP 56925 OMPA-like
11 11 3 0 SCOP 49452 Starch-binding domain-like
13 11 7 0 SCOP 50156 PDZ domain-like
11 11 6 1 SCOP 56176 FAD-binding/transporter-associated domain-like
13 11 8 0 SCOP 49265 Fibronectin type III
13 11 10 0 SCOP 49299 PKD domain
10 10 3 3 SCOP 55120 Pseudouridine synthase
14 10 8 1 SCOP 54534 FKBP-like
11 10 8 2 SCOP 50447 Translation proteins
10 10 1 1 SCOP 143011 RelE-like
10 10 4 0 SCOP 53300 vWA-like
18 10 4 0 SCOP 103481 Multidrug resistance efflux transporter EmrE
10 10 2 1 SCOP 101874 YceI-like
10 10 2 0 SCOP 48498 Tetracyclin repressor-like, C-terminal domain
9 9 3 2 SCOP 53271 PRTase-like
9 9 2 0 SCOP 51695 PLC-like phosphodiesterases
9 9 3 5 SCOP 51621 Phosphoenolpyruvate/pyruvate domain
9 9 2 3 SCOP 52283 Formate/glycerate dehydrogenase catalytic domain-like
9 9 6 1 SCOP 54631 CBS-domain pair
9 9 9 0 SCOP 49503 Cupredoxins
9 9 2 1 SCOP 56219 DNase I-like
12 9 9 0 SCOP 55021 ACT-like
8 8 1 3 SCOP 51366 Ribulose-phoshate binding barrel
8 8 2 1 SCOP 55298 YjgF-like
8 8 2 1 SCOP 56801 Acetyl-CoA synthetase-like
8 8 5 1 SCOP 109604 HD-domain/PDEase-like
8 8 6 1 SCOP 53955 Lysozyme-like
8 8 6 0 SCOP 50969 YVTN repeat-like/Quinoprotein amine dehydrogenase
11 8 8 0 SCOP 47781 RuvA domain 2-like
8 8 3 1 SCOP 50939 Sialidases
9 8 4 0 SCOP 74653 TolA/TonB C-terminal domain
8 8 5 0 SCOP 53244 MurD-like peptide ligases, peptide-binding domain
8 8 4 0 SCOP 49363 Purple acid phosphatase, N-terminal domain
8 8 5 2 SCOP 53623 MurD-like peptide ligases, catalytic domain
7 7 2 0 SCOP 52218 Flavoproteins
10 7 5 0 SCOP 52821 Rhodanese/Cell cycle control phosphatase
7 7 3 1 SCOP 51395 FMN-linked oxidoreductases
7 7 5 1 SCOP 51419 PLP-binding barrel
7 7 2 1 SCOP 50475 FMN-binding split barrel
7 7 2 1 SCOP 51430 NAD(P)-linked oxidoreductase
7 7 4 2 SCOP 74650 Galactose mutarotase-like
9 7 5 1 SCOP 51230 Single hybrid motif
18 7 2 1 SCOP 63411 LuxS/MPP-like metallohydrolase
7 7 6 0 SCOP 46548 alpha-helical ferredoxin
7 7 3 0 SCOP 52129 Caspase-like
8 7 5 1 SCOP 52440 PreATP-grasp domain
6 6 3 2 SCOP 53927 Cytidine deaminase-like
6 6 3 3 SCOP 53697 SIS domain
6 6 1 0 SCOP 47336 ACP-like
6 6 4 0 SCOP 51261 Duplicated hybrid motif
6 6 2 1 SCOP 53686 Tryptophan synthase beta subunit-like PLP-dependent enzymes
6 6 5 0 SCOP 54862 4Fe-4S ferredoxins
7 6 2 0 SCOP 48317 Acid phosphatase/Vanadium-dependent haloperoxidase
7 6 4 0 SCOP 48403 Ankyrin repeat
6 6 3 0 SCOP 56317 Carbon-nitrogen hydrolase
6 6 1 0 SCOP 88713 Glycoside hydrolase/deacetylase
6 6 3 0 SCOP 89550 PHP domain-like
6 6 4 2 SCOP 52467 DHS-like NAD/FAD-binding domain
6 6 4 1 SCOP 52738 Methylesterase CheB, C-terminal domain
6 6 6 1 SCOP 47323 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases
12 6 6 0 SCOP 54106 LysM domain
6 6 3 1 SCOP 52922 TK C-terminal domain-like
6 6 3 0 SCOP 158472 HAMP domain-like
7 6 4 1 SCOP 63380 Riboflavin synthase domain-like
6 6 5 0 SCOP 55545 beta-N-acetylhexosaminidase-like domain
5 5 4 0 SCOP 56112 Protein kinase-like (PK-like)
5 5 4 1 SCOP 50104 Translation proteins SH3-like domain
5 5 2 4 SCOP 53659 Isocitrate/Isopropylmalate dehydrogenase-like
5 5 4 1 SCOP 55174 Alpha-L RNA-binding motif
5 5 3 2 SCOP 75217 alpha/beta knot
5 5 4 2 SCOP 53633 Carbamate kinase-like
5 5 4 2 SCOP 56672 DNA/RNA polymerases
5 5 4 0 SCOP 47226 Histidine-containing phosphotransfer domain, HPT domain
10 5 3 0 SCOP 52058 L domain-like
5 5 4 3 SCOP 55931 Glutamine synthetase/guanido kinase
5 5 2 0 SCOP 52091 SpoIIaa-like
5 5 3 0 SCOP 46955 Putative DNA-binding domain
5 5 4 1 SCOP 52016 LeuD/IlvD-like
5 5 3 0 SCOP 117916 Fe-S cluster assembly (FSCA) domain-like
5 5 3 1 SCOP 56645 Acyl-CoA dehydrogenase NM domain-like
5 5 3 1 SCOP 102588 LmbE-like
5 5 3 1 SCOP 47203 Acyl-CoA dehydrogenase C-terminal domain-like
5 5 3 0 SCOP 52343 Ferredoxin reductase-like, C-terminal NADP-linked domain
5 5 3 0 SCOP 52743 Subtilisin-like
8 5 2 1 SCOP 56003 Molybdenum cofactor-binding domain
6 5 4 0 SCOP 101898 NHL repeat
5 5 3 0 SCOP 117281 Kelch motif
5 5 2 3 SCOP 53223 Aminoacid dehydrogenase-like, N-terminal domain
5 5 2 1 SCOP 56436 C-type lectin-like
5 5 4 1 SCOP 48334 DNA repair protein MutS, domain III
5 5 2 0 SCOP 101967 Adhesin YadA, collagen-binding domain
5 5 1 0 SCOP 55060 GHMP Kinase, C-terminal domain
5 5 2 0 SCOP 47741 CO dehydrogenase ISP C-domain like
4 4 1 1 SCOP 53790 Tetrapyrrole methylase
4 4 1 0 SCOP 111331 NAD kinase/diacylglycerol kinase-like
4 4 2 1 SCOP 55920 Creatinase/aminopeptidase
4 4 2 0 SCOP 69593 Glycerol-3-phosphate (1)-acyltransferase
4 4 1 2 SCOP 48557 L-aspartase-like
4 4 4 2 SCOP 55821 YrdC/RibB
4 4 2 0 SCOP 111283 Putative modulator of DNA gyrase, PmbA/TldD
4 4 3 2 SCOP 48150 DNA-glycosylase
4 4 1 0 SCOP 53254 Phosphoglycerate mutase-like
4 4 1 0 SCOP 49764 HSP20-like chaperones
4 4 3 0 SCOP 55469 FMN-dependent nitroreductase-like
4 4 2 1 SCOP 53590 Nucleoside hydrolase
4 4 2 0 SCOP 51306 LexA/Signal peptidase
4 4 3 1 SCOP 56529 FAH
4 4 3 0 SCOP 55008 HMA, heavy metal-associated domain
4 4 3 1 SCOP 52151 FabD/lysophospholipase-like
4 4 1 2 SCOP 55620 Tetrahydrobiopterin biosynthesis enzymes-like
4 4 4 1 SCOP 52954 Class II aaRS ABD-related
4 4 3 0 SCOP 49478 Cna protein B-type domain
4 4 2 0 SCOP 141571 Pentapeptide repeat-like
4 4 3 1 SCOP 57783 Zinc beta-ribbon
4 4 1 1 SCOP 51679 Bacterial luciferase-like
4 4 2 1 SCOP 56524 Oxidoreductase molybdopterin-binding domain
4 4 4 0 SCOP 81901 HCP-like
4 4 4 1 SCOP 50692 ADC-like
4 4 1 1 SCOP 50956 Thermostable phytase (3-phytase)
4 4 4 1 SCOP 88697 PUA domain-like
4 4 2 1 SCOP 143631 ApbE-like
4 4 2 0 SCOP 111384 OmpH-like
4 4 2 0 SCOP 81593 Nucleotidyltransferase substrate binding subunit/domain
4 4 2 0 SCOP 160574 BT0923-like
5 4 3 1 SCOP 52777 CoA-dependent acyltransferases
4 4 2 1 SCOP 51246 Rudiment single hybrid motif
7 4 3 1 SCOP 54980 EF-G C-terminal domain-like
4 4 2 0 SCOP 48230 Chondroitin AC/alginate lyase
4 4 3 1 SCOP 56719 Type II DNA topoisomerase
4 4 4 0 SCOP 81665 Calcium ATPase, transmembrane domain M
4 4 3 1 SCOP 50621 Alanine racemase C-terminal domain-like
4 4 3 0 SCOP 63737 Leukotriene A4 hydrolase N-terminal domain
4 4 1 0 SCOP 55031 Bacterial exopeptidase dimerisation domain
4 4 4 0 SCOP 81653 Calcium ATPase, transduction domain A
3 3 3 0 SCOP 57716 Glucocorticoid receptor-like (DNA-binding domain)
3 3 3 0 SCOP 109998 Triger factor/SurA peptide-binding domain-like
3 3 2 1 SCOP 51730 FAD-linked oxidoreductase
3 3 1 1 SCOP 48576 Terpenoid synthases
3 3 1 0 SCOP 81452 Cytochrome c oxidase subunit III-like
3 3 2 0 SCOP 56988 Anthrax protective antigen
3 3 2 0 SCOP 50182 Sm-like ribonucleoproteins
3 3 2 1 SCOP 48613 Heme oxygenase-like
3 3 1 0 SCOP 110296 Oligoxyloglucan reducing end-specific cellobiohydrolase
4 3 2 2 SCOP 51726 UROD/MetE-like
3 3 3 1 SCOP 53328 Formyltransferase
3 3 1 1 SCOP 56322 ADC synthase
3 3 1 0 SCOP 55144 LigT-like
4 3 3 2 SCOP 54506 Diaminopimelate epimerase-like
3 3 1 1 SCOP 56752 D-aminoacid aminotransferase-like PLP-dependent enzymes
3 3 3 0 SCOP 52047 RNI-like
3 3 1 1 SCOP 53056 beta-carbonic anhydrase, cab
3 3 2 2 SCOP 55909 Pentein
3 3 1 1 SCOP 52788 Phosphotyrosine protein phosphatases I
3 3 3 1 SCOP 81442 Cytochrome c oxidase subunit I-like
3 3 2 0 SCOP 144091 Rhomboid-like
3 3 1 1 SCOP 69118 AhpD-like
3 3 2 1 SCOP 102405 MCP/YpsA-like
3 3 2 1 SCOP 50494 Trypsin-like serine proteases
3 3 2 0 SCOP 47598 Ribbon-helix-helix
3 3 1 0 SCOP 53807 "Helical backbone" metal receptor
3 3 3 0 SCOP 50022 ISP domain
3 3 3 0 SCOP 46767 Methylated DNA-protein cysteine methyltransferase, C-terminal domain
3 3 1 0 SCOP 88874 Receptor-binding domain of short tail fibre protein gp12
3 3 3 0 SCOP 53218 Molybdenum cofactor biosynthesis proteins
3 3 2 0 SCOP 50800 PK beta-barrel domain-like
3 3 3 1 SCOP 53732 Aconitase iron-sulfur domain
3 3 1 1 SCOP 117396 TM1631-like
4 3 2 0 SCOP 82153 FAS1 domain
3 3 2 0 SCOP 51004 C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
4 3 3 0 SCOP 101386 all-alpha NTP pyrophosphatases
3 3 2 0 SCOP 159888 YdhG-like
4 3 3 1 SCOP 54814 Prokaryotic type KH domain (KH-domain type II)
3 3 3 1 SCOP 52242 Cobalamin (vitamin B12)-binding domain
6 3 2 1 SCOP 56024 Phospholipase D/nuclease
3 3 3 1 SCOP 56091 DNA ligase/mRNA capping enzyme, catalytic domain
3 3 3 0 SCOP 46565 Chaperone J-domain
3 3 2 0 SCOP 46589 tRNA-binding arm
3 3 1 1 SCOP 143865 CorA soluble domain-like
3 3 3 1 SCOP 53706 Formate dehydrogenase/DMSO reductase, domains 1-3
3 3 2 0 SCOP 55103 FAD-linked oxidases, C-terminal domain
3 3 1 0 SCOP 81923 Double Clp-N motif
3 3 2 0 SCOP 49344 CBD9-like
4 3 3 0 SCOP 56014 Nitrite and sulphite reductase 4Fe-4S domain-like
3 3 2 1 SCOP 48019 post-AAA+ oligomerization domain-like
4 3 3 1 SCOP 51971 Nucleotide-binding domain
3 3 3 0 SCOP 117074 Hypothetical protein PA1324
4 3 2 1 SCOP 56042 PurM C-terminal domain-like
4 3 2 1 SCOP 55326 PurM N-terminal domain-like
3 3 1 0 SCOP 144083 Magnesium transport protein CorA, transmembrane region
3 3 2 0 SCOP 63418 MurE/MurF N-terminal domain
3 3 1 0 SCOP 51984 MurCD N-terminal domain
3 3 1 0 SCOP 52413 UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
3 3 2 0 SCOP 117892 Band 7/SPFH domain
3 3 3 1 SCOP 50677 ValRS/IleRS/LeuRS editing domain
3 3 2 1 SCOP 53743 FucI/AraA N-terminal and middle domains
3 3 3 1 SCOP 81271 TGS-like
4 3 2 0 SCOP 49303 beta-Galactosidase/glucuronidase domain
3 3 2 1 SCOP 143724 PHP14-like
3 3 2 1 SCOP 52025 PA domain
3 3 3 0 SCOP 47757 Chemotaxis receptor methyltransferase CheR, N-terminal domain
3 3 2 0 SCOP 47005 Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
3 3 2 0 SCOP 140356 PPK N-terminal domain-like
2 2 2 0 SCOP 161098 MetI-like
2 2 2 1 SCOP 53167 Purine and uridine phosphorylases
2 2 1 0 SCOP 57829 Zn-binding ribosomal proteins
2 2 2 0 SCOP 81606 PP2C-like
2 2 2 1 SCOP 142433 CinA-like
2 2 1 1 SCOP 53137 Translational machinery components
2 2 2 1 SCOP 46946 S13-like H2TH domain
2 2 2 1 SCOP 64182 DHH phosphoesterases
4 2 1 0 SCOP 56214 4'-phosphopantetheinyl transferase
2 2 1 0 SCOP 143800 L28p-like
2 2 1 1 SCOP 75620 Release factor
2 2 1 1 SCOP 55068 Peptide methionine sulfoxide reductase
2 2 1 1 SCOP 82784 OsmC-like
2 2 1 1 SCOP 51316 Mss4-like
2 2 1 2 SCOP 64484 beta and beta-prime subunits of DNA dependent RNA-polymerase
2 2 1 0 SCOP 89360 HesB-like domain
2 2 2 1 SCOP 111337 QueA-like
2 2 2 1 SCOP 50715 Ribosomal protein L25-like
2 2 1 1 SCOP 56770 HydA/Nqo6-like
2 2 2 1 SCOP 51412 Inosine monophosphate dehydrogenase (IMPDH)
2 2 1 0 SCOP 54285 MoaD/ThiS
2 2 1 1 SCOP 56655 Carbohydrate phosphatase
2 2 1 1 SCOP 55205 EPT/RTPC-like
2 2 1 1 SCOP 81345 ABC transporter involved in vitamin B12 uptake, BtuC
2 2 1 1 SCOP 56796 Dehydroquinate synthase-like
2 2 2 0 SCOP 50978 WD40 repeat-like
2 2 1 0 SCOP 55315 L30e-like
2 2 2 1 SCOP 50891 Cyclophilin-like
2 2 2 1 SCOP 56634 Heme-dependent catalase-like
2 2 1 1 SCOP 52499 Isochorismatase-like hydrolases
2 2 1 0 SCOP 48239 Terpenoid cyclases/Protein prenyltransferases
2 2 1 0 SCOP 50630 Acid proteases
2 2 2 1 SCOP 69572 Activating enzymes of the ubiquitin-like proteins
2 2 1 0 SCOP 47819 HRDC-like
2 2 2 1 SCOP 53639 AraD/HMP-PK domain-like
2 2 1 2 SCOP 52972 ITPase-like
2 2 1 0 SCOP 81343 Fumarate reductase respiratory complex transmembrane subunits
2 2 1 1 SCOP 101960 Stabilizer of iron transporter SufD
2 2 2 1 SCOP 46458 Globin-like
2 2 1 0 SCOP 143243 Nqo5-like
2 2 2 1 SCOP 51717 Dihydropteroate synthetase-like
2 2 2 0 SCOP 55073 Nucleotide cyclase
2 2 1 0 SCOP 158446 IVS-encoded protein-like
2 2 2 1 SCOP 51998 PFL-like glycyl radical enzymes
2 2 1 1 SCOP 48264 Cytochrome P450
2 2 2 0 SCOP 143100 TTHA1013/TTHA0281-like
2 2 2 0 SCOP 82771 GIY-YIG endonuclease
2 2 1 0 SCOP 55166 Hedgehog/DD-peptidase
2 2 1 0 SCOP 50118 Cell growth inhibitor/plasmid maintenance toxic component
2 2 1 1 SCOP 64167 SurE-like
2 2 1 1 SCOP 117782 YbjQ-like
2 2 2 0 SCOP 110857 Gamma-glutamyl cyclotransferase-like
2 2 2 1 SCOP 81340 Clc chloride channel
2 2 2 0 SCOP 161111 Cation efflux protein transmembrane domain-like
2 2 1 1 SCOP 56762 HydB/Nqo4-like
2 2 2 1 SCOP 54736 ClpS-like
2 2 1 1 SCOP 50993 Peptidase/esterase 'gauge' domain
2 2 1 0 SCOP 82689 Mechanosensitive channel protein MscS (YggB), C-terminal domain
2 2 1 0 SCOP 141694 AF2212/PG0164-like
2 2 1 0 SCOP 160719 gpW/gp25-like
3 2 2 1 SCOP 51391 Thiamin phosphate synthase
2 2 1 1 SCOP 48173 Cryptochrome/photolyase FAD-binding domain
2 2 1 1 SCOP 52425 Cryptochrome/photolyase, N-terminal domain
2 2 1 1 SCOP 89028 Cobalamin adenosyltransferase-like
2 2 2 0 SCOP 89095 GatB/YqeY motif
2 2 2 0 SCOP 48600 Chorismate mutase II
2 2 2 0 SCOP 89392 Prokaryotic lipoproteins and lipoprotein localization factors
2 2 1 1 SCOP 118215 Proton glutamate symport protein
2 2 2 0 SCOP 140931 Fic-like
2 2 2 1 SCOP 53041 Resolvase-like
2 2 1 0 SCOP 143880 NE0471 N-terminal domain-like
3 2 2 0 SCOP 117070 LEA14-like
2 2 1 0 SCOP 55136 Probable bacterial effector-binding domain
2 2 1 0 SCOP 89562 RraA-like
2 2 2 1 SCOP 55186 ThrRS/AlaRS common domain
2 2 2 0 SCOP 141523 L,D-transpeptidase catalytic domain-like
2 2 1 0 SCOP 48008 GntR ligand-binding domain-like
2 2 1 0 SCOP 53092 Creatinase/prolidase N-terminal domain
2 2 1 1 SCOP 50465 EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
2 2 1 1 SCOP 55424 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
6 2 1 0 SCOP 55979 DNA clamp
2 2 1 0 SCOP 69279 Phage tail proteins
2 2 1 1 SCOP 56712 Prokaryotic type I DNA topoisomerase
2 2 1 1 SCOP 51690 Nicotinate/Quinolinate PRTase C-terminal domain-like
2 2 2 0 SCOP 69304 Tricorn protease N-terminal domain
4 2 2 0 SCOP 49313 Cadherin-like
2 2 2 0 SCOP 55658 L9 N-domain-like
2 2 2 1 SCOP 52210 Succinyl-CoA synthetase domains
2 2 2 1 SCOP 56037 PheT/TilS domain
2 2 1 0 SCOP 141673 MOSC N-terminal domain-like
2 2 1 1 SCOP 53671 Aspartate/ornithine carbamoyltransferase
2 2 2 1 SCOP 54719 Fe,Mn superoxide dismutase (SOD), C-terminal domain
2 2 2 0 SCOP 54791 Eukaryotic type KH-domain (KH-domain type I)
2 2 1 0 SCOP 48726 Immunoglobulin
2 2 1 0 SCOP 54665 CO dehydrogenase molybdoprotein N-domain-like
2 2 2 1 SCOP 56425 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain
2 2 2 0 SCOP 46977 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
2 2 1 0 SCOP 52279 Beta-D-glucan exohydrolase, C-terminal domain
2 2 2 0 SCOP 46600 C-terminal UvrC-binding domain of UvrB
2 2 1 0 SCOP 55447 CO dehydrogenase flavoprotein C-terminal domain-like
2 2 1 0 SCOP 110997 Sporulation related repeat
2 2 1 0 SCOP 47823 lambda integrase-like, N-terminal domain
2 2 2 0 SCOP 100879 Lesion bypass DNA polymerase (Y-family), little finger domain
2 2 2 0 SCOP 54768 dsRNA-binding domain-like
2 2 2 0 SCOP 53155 Methylated DNA-protein cysteine methyltransferase domain
2 2 1 0 SCOP 82861 Mechanosensitive channel protein MscS (YggB), transmembrane region
2 2 2 0 SCOP 56849 delta-Endotoxin (insectocide), N-terminal domain
3 2 2 0 SCOP 55124 Nitrite/Sulfite reductase N-terminal domain-like
6 2 2 0 SCOP 53738 Phosphoglucomutase, first 3 domains
2 2 2 0 SCOP 55957 Phosphoglucomutase, C-terminal domain
2 2 1 0 SCOP 69255 gp5 N-terminal domain-like
2 2 1 1 SCOP 143975 IlvD/EDD N-terminal domain-like
2 2 1 1 SCOP 54675 Nicotinate/Quinolinate PRTase N-terminal domain-like
2 2 1 1 SCOP 50443 FucI/AraA C-terminal domain-like
2 2 1 0 SCOP 50615 N-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 1 0 SCOP 54368 Glutamine synthetase, N-terminal domain
4 2 2 0 SCOP 49493 HSP40/DnaJ peptide-binding domain
2 2 2 1 SCOP 46609 Fe,Mn superoxide dismutase (SOD), N-terminal domain
2 2 1 1 SCOP 47917 C-terminal domain of alpha and beta subunits of F1 ATP synthase
2 2 2 0 SCOP 56519 Penicillin binding protein dimerisation domain
1 1 1 1 SCOP 56731 DNA primase core
1 1 1 0 SCOP 48013 NusB-like
1 1 1 1 SCOP 81338 Aquaporin-like
1 1 1 1 SCOP 74982 Small protein B (SmpB)
1 1 1 1 SCOP 56808 Ribosomal protein L1
1 1 1 1 SCOP 53178 Peptidyl-tRNA hydrolase-like
1 1 1 1 SCOP 47973 Ribosomal protein S7
1 1 1 0 SCOP 46911 Ribosomal protein S18
1 1 1 1 SCOP 52141 Uracil-DNA glycosylase-like
1 1 1 1 SCOP 75304 Amidase signature (AS) enzymes
1 1 1 1 SCOP 143597 YojJ-like
1 1 1 1 SCOP 56420 Peptide deformylase
1 1 1 0 SCOP 54197 HIT-like
1 1 1 0 SCOP 82607 YbaB-like
1 1 1 0 SCOP 89919 Ribosome-binding factor A, RbfA
1 1 1 1 SCOP 54999 Ribosomal protein S10
1 1 1 1 SCOP 52166 Ribosomal protein L4
1 1 1 0 SCOP 54189 Ribosomal proteins S24e, L23 and L15e
1 1 1 1 SCOP 54570 Ribosomal protein S19
1 1 1 0 SCOP 54843 Ribosomal protein L22
1 1 1 1 SCOP 54686 Ribosomal protein L16p/L10e
1 1 1 1 SCOP 50193 Ribosomal protein L14
1 1 1 1 SCOP 55282 RL5-like
1 1 1 1 SCOP 56047 Ribosomal protein S8
1 1 1 1 SCOP 52080 Ribosomal proteins L15p and L18e
1 1 1 0 SCOP 103491 Preprotein translocase SecY subunit
1 1 1 0 SCOP 57840 Ribosomal protein L36
1 1 1 1 SCOP 64263 Prokaryotic ribosomal protein L17
1 1 1 0 SCOP 143034 L35p-like
1 1 1 1 SCOP 74731 Ribosomal protein L20
1 1 1 1 SCOP 53784 Phosphofructokinase
1 1 1 0 SCOP 89447 AbrB/MazE/MraZ-like
1 1 1 1 SCOP 55831 Thymidylate synthase/dCMP hydroxymethylase
1 1 1 0 SCOP 141091 L21p-like
1 1 1 0 SCOP 110324 Ribosomal L27 protein-like
1 1 1 1 SCOP 53748 Phosphoglycerate kinase
1 1 1 1 SCOP 75625 YebC-like
1 1 1 0 SCOP 82649 SufE/NifU
1 1 1 1 SCOP 50324 Inorganic pyrophosphatase
1 1 1 0 SCOP 47729 IHF-like DNA-binding proteins
1 1 1 0 SCOP 160369 Ribosomal protein L10-like
1 1 1 0 SCOP 46992 Ribosomal protein S20
1 1 1 1 SCOP 89623 Ribose/Galactose isomerase RpiB/AlsB
1 1 1 1 SCOP 52943 ATP synthase (F1-ATPase), gamma subunit
1 1 1 1 SCOP 52161 Ribosomal protein L13
1 1 1 1 SCOP 47060 S15/NS1 RNA-binding domain
1 1 1 1 SCOP 51351 Triosephosphate isomerase (TIM)
1 1 1 1 SCOP 55194 Ribosome recycling factor, RRF
1 1 1 0 SCOP 54565 Ribosomal protein S16
1 1 1 1 SCOP 69765 IpsF-like
1 1 1 1 SCOP 103263 Chorismate synthase, AroC
1 1 1 1 SCOP 51713 tRNA-guanine transglycosylase
1 1 1 1 SCOP 52313 Ribosomal protein S2
1 1 1 1 SCOP 64005 Undecaprenyl diphosphate synthase
1 1 1 1 SCOP 142695 RibA-like
1 1 1 0 SCOP 101908 Putative isomerase YbhE
1 1 1 1 SCOP 102705 NIF3 (NGG1p interacting factor 3)-like
1 1 1 1 SCOP 52304 Type II 3-dehydroquinate dehydratase
1 1 1 0 SCOP 54060 His-Me finger endonucleases
1 1 1 0 SCOP 64307 SirA-like
1 1 1 0 SCOP 50685 Barwin-like endoglucanases
1 1 1 1 SCOP 52121 Lumazine synthase
1 1 1 0 SCOP 55129 Ribosomal protein L30p/L7e
1 1 1 0 SCOP 46561 Ribosomal protein L29 (L29p)
1 1 1 0 SCOP 54995 Ribosomal protein S6
1 1 1 0 SCOP 50985 RCC1/BLIP-II
1 1 1 1 SCOP 56104 SAICAR synthase-like
1 1 1 1 SCOP 48256 Citrate synthase
1 1 1 1 SCOP 69500 DTD-like
1 1 1 0 SCOP 52799 (Phosphotyrosine protein) phosphatases II
1 1 1 1 SCOP 102886 Coproporphyrinogen III oxidase
1 1 1 0 SCOP 55248 PCD-like
1 1 1 1 SCOP 53774 Glutaminase/Asparaginase
1 1 1 0 SCOP 57997 Tropomyosin
1 1 1 0 SCOP 54928 RNA-binding domain, RBD
1 1 1 1 SCOP 54919 Nucleoside diphosphate kinase, NDK
1 1 1 0 SCOP 110849 ParB/Sulfiredoxin
2 1 1 1 SCOP 48113 Heme-dependent peroxidases
1 1 1 1 SCOP 82282 Homocysteine S-methyltransferase
1 1 1 0 SCOP 55856 Cytochrome b5-like heme/steroid binding domain
1 1 1 0 SCOP 55257 RBP11-like subunits of RNA polymerase
1 1 1 0 SCOP 57850 RING/U-box
1 1 1 0 SCOP 64153 YjeF N-terminal domain-like
1 1 1 0 SCOP 55159 eIF1-like
1 1 1 0 SCOP 58113 Apolipoprotein A-I
1 1 1 0 SCOP 69618 HemD-like
1 1 1 1 SCOP 53800 Chelatase
1 1 1 0 SCOP 141734 HisI-like
1 1 1 0 SCOP 111038 YjbQ-like
1 1 1 1 SCOP 55040 Molybdenum cofactor biosynthesis protein C, MoaC
1 1 1 0 SCOP 143422 Transposase IS200-like
1 1 1 0 SCOP 53795 PEP carboxykinase-like
1 1 1 0 SCOP 55718 SCP-like
1 1 1 0 SCOP 102712 JAB1/MPN domain
1 1 1 1 SCOP 64438 CNF1/YfiH-like putative cysteine hydrolases
1 1 1 1 SCOP 52255 N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE)
1 1 1 1 SCOP 111352 Ammonium transporter
1 1 1 1 SCOP 142754 NadA-like
1 1 1 1 SCOP 56266 DmpA/ArgJ-like
1 1 1 0 SCOP 49482 Aromatic compound dioxygenase
1 1 1 0 SCOP 82697 PurS-like
1 1 1 1 SCOP 55083 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase, HPPK
1 1 1 0 SCOP 103256 Hypothetical protein TM0160
1 1 1 0 SCOP 55797 PR-1-like
1 1 1 1 SCOP 89733 L-sulfolactate dehydrogenase-like
1 1 1 1 SCOP 63892 Pyridoxine 5'-phosphate synthase
1 1 1 0 SCOP 52507 Homo-oligomeric flavin-containing Cys decarboxylases, HFCD
1 1 1 0 SCOP 54690 Molybdopterin synthase subunit MoaE
1 1 1 0 SCOP 54913 GlnB-like
1 1 1 0 SCOP 141000 Glu-tRNAGln amidotransferase C subunit
1 1 1 1 SCOP 110399 ThiG-like
1 1 1 0 SCOP 159501 EreA/ChaN-like
1 1 1 1 SCOP 111304 Recombination protein RecR
1 1 1 0 SCOP 117856 AF0104/ALDC/Ptd012-like
1 1 1 0 SCOP 159894 YgaC/TfoX-N like
1 1 1 0 SCOP 50242 TIMP-like
1 1 1 1 SCOP 103365 Hypothetical protein PH1602
2 1 1 0 SCOP 116734 DNA methylase specificity domain
1 1 1 0 SCOP 69047 Hypothetical protein YjbJ
1 1 1 1 SCOP 52733 Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)
1 1 1 0 SCOP 69065 RNase III domain-like
1 1 1 0 SCOP 55200 Translation initiation factor IF3, C-terminal domain
1 1 1 0 SCOP 143081 BB1717-like
1 1 1 0 SCOP 102829 Cell division protein ZapA-like
1 1 1 0 SCOP 143456 VC0467-like
1 1 1 0 SCOP 81330 Gated mechanosensitive channel
1 1 1 0 SCOP 110916 Peptidyl-tRNA hydrolase domain-like
1 1 1 1 SCOP 103025 Folate-binding domain
1 1 1 1 SCOP 110069 ApaG-like
1 1 1 1 SCOP 140478 LemA-like
1 1 1 1 SCOP 52335 Methylglyoxal synthase-like
1 1 1 0 SCOP 48295 TrpR-like
1 1 1 0 SCOP 57802 Rubredoxin-like
1 1 1 0 SCOP 50037 C-terminal domain of transcriptional repressors
1 1 1 0 SCOP 69322 Tricorn protease domain 2
1 1 1 0 SCOP 50814 Lipocalins
1 1 1 1 SCOP 56507 Methionine synthase activation domain-like
1 1 1 0 SCOP 64288 Chorismate lyase-like
1 1 1 1 SCOP 110738 Glycerate kinase I
2 1 1 1 SCOP 51703 Cobalamin (vitamin B12)-dependent enzymes
1 1 1 1 SCOP 51219 TRAP-like
1 1 1 0 SCOP 50486 FMT C-terminal domain-like
1 1 1 0 SCOP 75011 3-carboxy-cis,cis-mucoante lactonizing enzyme
1 1 1 0 SCOP 50331 MOP-like
1 1 1 0 SCOP 142764 YgbK-like
1 1 1 0 SCOP 69754 Ribosome binding protein Y (YfiA homologue)
1 1 1 0 SCOP 103501 Respiratory nitrate reductase 1 gamma chain
1 1 1 0 SCOP 48695 Multiheme cytochromes
1 1 1 0 SCOP 103515 Autotransporter
1 1 1 1 SCOP 110395 CutC-like
1 1 1 0 SCOP 142906 YjbR-like
1 1 1 1 SCOP 50974 Nitrous oxide reductase, N-terminal domain
1 1 1 1 SCOP 56534 Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
1 1 1 0 SCOP 100939 SPOC domain-like
1 1 1 0 SCOP 109709 KorB DNA-binding domain-like
1 1 1 0 SCOP 158791 MgtE N-terminal domain-like
1 1 1 0 SCOP 102198 Putative cyclase
1 1 1 0 SCOP 52038 Barstar-related
1 1 1 0 SCOP 50346 PRC-barrel domain
1 1 1 1 SCOP 56574 Serpins
1 1 1 1 SCOP 52490 Tubulin nucleotide-binding domain-like
1 1 1 0 SCOP 63867 MoeA C-terminal domain-like
1 1 1 0 SCOP 56563 Major capsid protein gp5
1 1 1 0 SCOP 50199 Staphylococcal nuclease
1 1 1 0 SCOP 69864 Argininosuccinate synthetase, C-terminal domain
1 1 1 0 SCOP 48024 N-terminal domain of DnaB helicase
1 1 1 1 SCOP 158832 Tex N-terminal region-like
1 1 1 1 SCOP 48592 GroEL equatorial domain-like
1 1 1 1 SCOP 69336 Alpha subunit of glutamate synthase, C-terminal domain
2 1 1 0 SCOP 160113 YegP-like
1 1 1 0 SCOP 141318 TM0957-like
1 1 1 0 SCOP 116960 YfbU-like
1 1 1 0 SCOP 82093 Heme chaperone CcmE
1 1 1 0 SCOP 57938 DnaJ/Hsp40 cysteine-rich domain
1 1 1 1 SCOP 142823 ComB-like
1 1 1 0 SCOP 50370 Ricin B-like lectins
1 1 1 1 SCOP 144064 Heme iron utilization protein-like
1 1 1 0 SCOP 82114 Riboflavin kinase-like
1 1 1 0 SCOP 46906 Ribosomal protein L11, C-terminal domain
1 1 1 0 SCOP 160443 SMR domain-like
1 1 1 1 SCOP 82057 Prokaryotic SH3-related domain
1 1 1 0 SCOP 63825 YWTD domain
1 1 1 1 SCOP 102645 CoaB-like
1 1 1 1 SCOP 102110 (2r)-phospho-3-sulfolactate synthase ComA
1 1 1 0 SCOP 82185 Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain
1 1 1 0 SCOP 48537 Phospholipase C/P1 nuclease
1 1 1 0 SCOP 58104 Methyl-accepting chemotaxis protein (MCP) signaling domain
1 1 1 1 SCOP 54821 Ribosomal protein S3 C-terminal domain
1 1 1 0 SCOP 81573 F1F0 ATP synthase subunit B, membrane domain
1 1 1 0 SCOP 69360 Cell wall binding repeat
1 1 1 0 SCOP 52935 PK C-terminal domain-like
1 1 1 0 SCOP 160387 NosL/MerB-like
1 1 1 0 SCOP 52009 Phosphohistidine domain
3 1 1 1 SCOP 55973 S-adenosylmethionine synthetase
1 1 1 0 SCOP 118116 DNA mismatch repair protein MutL
1 1 1 0 SCOP 81336 F1F0 ATP synthase subunit A
1 1 1 0 SCOP 49384 Carbohydrate-binding domain
1 1 1 0 SCOP 47789 C-terminal domain of RNA polymerase alpha subunit
1 1 1 0 SCOP 51344 Epsilon subunit of F1F0-ATP synthase N-terminal domain
1 1 1 0 SCOP 160419 YdfO-like
1 1 1 0 SCOP 55816 5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain
2 1 1 0 SCOP 53681 Aspartate/glutamate racemase
1 1 1 0 SCOP 82679 N-utilization substance G protein NusG, N-terminal domain
1 1 1 0 SCOP 55190 Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain
2 1 1 0 SCOP 116726 TrkA C-terminal domain-like
1 1 1 0 SCOP 49842 TNF-like
1 1 1 0 SCOP 69055 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
1 1 1 0 SCOP 49373 Invasin/intimin cell-adhesion fragments
1 1 1 1 SCOP 52418 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain
1 1 1 0 SCOP 47090 PGBD-like
1 1 1 0 SCOP 48056 Di-copper centre-containing domain
1 1 1 0 SCOP 58014 Coiled-coil domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 63999 Thiamin pyrophosphokinase, catalytic domain
1 1 1 0 SCOP 81464 Cytochrome c oxidase subunit II-like, transmembrane region
1 1 1 1 SCOP 161093 MgtE membrane domain-like
1 1 1 0 SCOP 55307 Tubulin C-terminal domain-like
1 1 1 1 SCOP 140990 FtsH protease domain-like
1 1 1 0 SCOP 57884 Ada DNA repair protein, N-terminal domain (N-Ada 10)
1 1 1 0 SCOP 142984 Nqo1 middle domain-like
1 1 1 0 SCOP 51294 Hedgehog/intein (Hint) domain
1 1 1 0 SCOP 48163 An anticodon-binding domain of class I aminoacyl-tRNA synthetases
1 1 1 0 SCOP 74853 Lamin A/C globular tail domain
1 1 1 1 SCOP 52021 Carbamoyl phosphate synthetase, small subunit N-terminal domain
1 1 1 1 SCOP 52029 GroEL apical domain-like
1 1 1 0 SCOP 81891 Poly A polymerase C-terminal region-like
1 1 1 0 SCOP 47979 Iron-dependent repressor protein, dimerization domain
1 1 1 1 SCOP 54810 GMP synthetase C-terminal dimerisation domain
1 1 1 1 SCOP 101904 GyrA/ParC C-terminal domain-like
1 1 1 0 SCOP 57863 ArfGap/RecO-like zinc finger
1 1 1 1 SCOP 143548 Serine metabolism enzymes domain
1 1 1 0 SCOP 47364 Domain of the SRP/SRP receptor G-proteins
1 1 1 0 SCOP 48300 Ribosomal protein L7/12, oligomerisation (N-terminal) domain
1 1 1 1 SCOP 100920 Heat shock protein 70kD (HSP70), peptide-binding domain
1 1 1 0 SCOP 141322 NfeD domain-like
1 1 1 0 SCOP 51101 Mannose-binding lectins
1 1 1 0 SCOP 143477 TM1622-like
1 1 1 1 SCOP 81631 PAP/OAS1 substrate-binding domain
1 1 1 0 SCOP 46934 UBA-like
1 1 1 0 SCOP 160240 Cation efflux protein cytoplasmic domain-like
1 1 1 0 SCOP 47648 Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
1 1 1 1 SCOP 56327 LDH C-terminal domain-like
1 1 1 0 SCOP 110836 Hypothetical protein SAV1430
1 1 1 0 SCOP 110921 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
1 1 1 0 SCOP 69075 Glutamyl tRNA-reductase dimerization domain
1 1 1 1 SCOP 63882 MoeA N-terminal region -like
1 1 1 0 SCOP 52113 BRCT domain
1 1 1 0 SCOP 48431 Lipovitellin-phosvitin complex, superhelical domain
1 1 1 0 SCOP 141259 CarD-like
1 1 1 0 SCOP 47794 Rad51 N-terminal domain-like
2 1 1 0 SCOP 56053 Ribosomal protein L6
1 1 1 0 SCOP 75420 YhbC-like, N-terminal domain
1 1 1 0 SCOP 81624 N-terminal domain of MutM-like DNA repair proteins
1 1 1 0 SCOP 54752 RecA protein, C-terminal domain
1 1 1 0 SCOP 100934 Heat shock protein 70kD (HSP70), C-terminal subdomain
1 1 1 0 SCOP 54782 Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain
1 1 1 1 SCOP 140490 Nqo1C-terminal domain-like
1 1 1 0 SCOP 102735 Trigger factor ribosome-binding domain
1 1 1 0 SCOP 159283 Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain
1 1 1 0 SCOP 46557 GreA transcript cleavage protein, N-terminal domain
1 1 1 0 SCOP 47807 5' to 3' exonuclease, C-terminal subdomain
1 1 1 1 SCOP 47446 Signal peptide-binding domain
1 1 1 0 SCOP 54991 Anticodon-binding domain of PheRS
1 1 1 0 SCOP 141986 LD-carboxypeptidase A C-terminal domain-like
1 1 1 1 SCOP 55271 DNA repair protein MutS, domain I
1 1 1 0 SCOP 55048 Probable ACP-binding domain of malonyl-CoA ACP transacylase
1 1 1 0 SCOP 47928 N-terminal domain of the delta subunit of the F1F0-ATP synthase
1 1 1 1 SCOP 48108 Carbamoyl phosphate synthetase, large subunit connection domain
1 1 1 1 SCOP 82051 Obg GTP-binding protein N-terminal domain
1 1 1 0 SCOP 47672 Transferrin receptor-like dimerisation domain
1 1 1 1 SCOP 142019 Nqo1 FMN-binding domain-like
1 1 1 0 SCOP 55261 GAD domain-like
1 1 1 0 SCOP 51269 AFP III-like domain
2 1 1 0 SCOP 54713 Elongation factor Ts (EF-Ts), dimerisation domain
1 1 1 1 SCOP 64158 2,3-Bisphosphoglycerate-independent phosphoglycerate mutase, substrate-binding domain
1 1 1 0 SCOP 110942 HSP90 C-terminal domain
1 1 1 1 SCOP 51649 RuBisCo, C-terminal domain
1 1 1 0 SCOP 54966 RuBisCO, large subunit, small (N-terminal) domain
1 1 1 1 SCOP 54747 Ribosomal L11/L12e N-terminal domain
1 1 1 0 SCOP 117018 ATP-dependent DNA ligase DNA-binding domain
1 1 1 0 SCOP 69742 Glutamyl tRNA-reductase catalytic, N-terminal domain
2 1 1 0 SCOP 55666 Ribonuclease PH domain 2-like
1 1 1 0 SCOP 75615 Siroheme synthase middle domains-like
1 1 1 0 SCOP 48168 R1 subunit of ribonucleotide reductase, N-terminal domain
1 1 1 0 SCOP 81886 Helical scaffold and wing domains of SecA
1 1 1 0 SCOP 54849 GroEL-intermediate domain like
1 1 1 0 SCOP 54556 Chitinase insertion domain
1 1 1 1 SCOP 56194 Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase, MurB, C-terminal domain
1 1 1 0 SCOP 63862 Thiamin pyrophosphokinase, substrate-binding domain
1 1 1 0 SCOP 52156 Initiation factor IF2/eIF5b, domain 3
1 1 1 0 SCOP 116878 TrmE connector domain
1 1 1 0 SCOP 64586 C-terminal domain of ProRS
1 1 1 0 SCOP 51064 Head domain of nucleotide exchange factor GrpE
1 1 1 0 SCOP 55653 Ribosomal protein L9 C-domain
1 1 1 0 SCOP 75445 D-ribose-5-phosphate isomerase (RpiA), lid domain
1 1 1 0 SCOP 101790 Aminomethyltransferase beta-barrel domain
1 1 1 0 SCOP 143517 TRCF domain-like
1 1 1 1 SCOP 101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS)
1 1 1 0 SCOP 56553 Insert subdomain of RNA polymerase alpha subunit
1 1 1 0 SCOP 74778 Aconitase B, N-terminal domain
1 1 1 0 SCOP 63433 Fumarylacetoacetate hydrolase, FAH, N-terminal domain
1 1 1 1 SCOP 47644 Methionine synthase domain
1 1 1 0 SCOP 46929 DNA helicase RuvA subunit, C-terminal domain
1 1 1 0 SCOP 54184 Penicillin-binding protein 2x (pbp-2x), c-terminal domain
1 1 1 0 SCOP 101821 Aminopeptidase/glucanase lid domain
1 1 1 0 SCOP 54364 Translation initiation factor IF3, N-terminal domain
1 1 1 0 SCOP 69705 Transcription factor NusA, N-terminal domain
1 1 1 0 SCOP 158949 Smr-associated domain-like
1 1 1 0 SCOP 53150 DNA repair protein MutS, domain II
1 1 1 0 SCOP 81767 Pre-protein crosslinking domain of SecA
1 1 1 0 SCOP 47802 DNA polymerase beta, N-terminal domain-like
1 1 1 0 SCOP 81799 Putative methyltransferase TM0872, insert domain
1 1 1 0 SCOP 55869 DNA topoisomerase I domain
1 1 1 0 SCOP 46915 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
1 1 1 0 SCOP 109736 FGAM synthase PurL, linker domain
1 1 1 0 SCOP 160996 HI0933 insert domain-like
1 1 1 0 SCOP 57770 Methionyl-tRNA synthetase (MetRS), Zn-domain

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The following superfamilies have one or more weak hits:

SCOP superfamily Myosin rod fragments
SCOP superfamily Neurotransmitter-gated ion-channel transmembrane pore
SCOP superfamily MTH1187/YkoF-like
SCOP superfamily Inhibitor of vertebrate lysozyme, Ivy
SCOP superfamily Positive stranded ssRNA viruses
SCOP superfamily GckA/TtuD-like
SCOP superfamily Viral chemokine binding protein m3
SCOP superfamily N-terminal domain of bifunctional PutA protein
SCOP superfamily BRCA2 helical domain
SCOP superfamily beta-catenin-interacting protein ICAT
SCOP superfamily Photosystem I subunits PsaA/PsaB
SCOP superfamily Bacterial photosystem II reaction centre, L and M subunits
SCOP superfamily Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
SCOP superfamily Voltage-gated potassium channels
SCOP superfamily Mitotic arrest deficient-like 1, Mad1
SCOP superfamily Cullin homology domain
SCOP superfamily YhbY-like
SCOP superfamily Hypothetical protein MTH777 (MT0777)
SCOP superfamily YhbC-like, C-terminal domain
SCOP superfamily NSP3 homodimer
SCOP superfamily Phage fibre proteins
SCOP superfamily Nuclear receptor coactivator interlocking domain
SCOP superfamily Rho N-terminal domain-like
SCOP superfamily Phase 1 flagellin
SCOP superfamily DNA-binding domain of intron-encoded endonucleases
SCOP superfamily PX domain
SCOP superfamily RPB6/omega subunit-like
SCOP superfamily PTS-regulatory domain, PRD
SCOP superfamily Type I dockerin domain
SCOP superfamily Bacterial hemolysins
SCOP superfamily Variant surface glycoprotein (N-terminal domain)
SCOP superfamily Virus ectodomain
SCOP superfamily Rotavirus nonstructural proteins
SCOP superfamily Fibrinogen coiled-coil and central regions
SCOP superfamily Carboxypeptidase inhibitor
SCOP superfamily Aerolisin/ETX pore-forming domain
SCOP superfamily Leukocidin-like
SCOP superfamily Bcl-2 inhibitors of programmed cell death
SCOP superfamily Colicin
SCOP superfamily Sec1/munc18-like (SM) proteins
SCOP superfamily Prim-pol domain
SCOP superfamily Replication terminator protein (Tus)
SCOP superfamily ADP-ribosylation
SCOP superfamily Profilin (actin-binding protein)
SCOP superfamily Homing endonucleases
SCOP superfamily SH2 domain
SCOP superfamily RuBisCO, small subunit
SCOP superfamily Pepsin inhibitor-3
SCOP superfamily Protease propeptides/inhibitors
SCOP superfamily YcfA/nrd intein domain
SCOP superfamily POZ domain
SCOP superfamily GFP-like
SCOP superfamily Amine oxidase N-terminal region
SCOP superfamily DNA-binding domain
SCOP superfamily Chromo domain-like
SCOP superfamily LigB-like
SCOP superfamily TolB, N-terminal domain
SCOP superfamily Macro domain-like
SCOP superfamily Insect cysteine-rich antifreeze protein
SCOP superfamily alpha-D-mannose-specific plant lectins
SCOP superfamily delta-Endotoxin (insectocide), middle domain
SCOP superfamily Carbohydrate binding domain
SCOP superfamily Galactose oxidase, central domain
SCOP superfamily TolB, C-terminal domain
SCOP superfamily Tachylectin-2
SCOP superfamily Mannose 6-phosphate receptor domain
SCOP superfamily beta-Barrel protease inhibitors
SCOP superfamily Avidin/streptavidin
SCOP superfamily Virus attachment protein globular domain
SCOP superfamily PEBP-like
SCOP superfamily gamma-Crystallin-like
SCOP superfamily Bacterial adhesins
SCOP superfamily PapD-like
SCOP superfamily Aldehyde ferredoxin oxidoreductase, C-terminal domains
SCOP superfamily Ribosomal protein L19 (L19e)
SCOP superfamily Methyl-coenzyme M reductase alpha and beta chain C-terminal domain
SCOP superfamily DEATH domain
SCOP superfamily Ypt/Rab-GAP domain of gyp1p
SCOP superfamily Wiscott-Aldrich syndrome protein, WASP, C-terminal domain
SCOP superfamily Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain
SCOP superfamily t-snare proteins
SCOP superfamily STAT
SCOP superfamily GST C-terminal domain-like
SCOP superfamily EF-hand
SCOP superfamily Bromodomain
SCOP superfamily alpha-catenin/vinculin-like
SCOP superfamily Cytochromes
SCOP superfamily HSC20 (HSCB), C-terminal oligomerisation domain
SCOP superfamily HMG-box
SCOP superfamily Spectrin repeat
SCOP superfamily Double-stranded DNA-binding domain
SCOP superfamily CRAL/TRIO N-terminal domain
SCOP superfamily Prefoldin
SCOP superfamily PspA lactotransferrin-binding region
SCOP superfamily CHY zinc finger-like
SCOP superfamily YfgJ-like
SCOP superfamily Photosystem II antenna protein-like
SCOP superfamily SNF-like
SCOP superfamily AF1531-like
SCOP superfamily PSTPO5379-like
SCOP superfamily ATP12-like
SCOP superfamily Rv2827c C-terminal domain-like
SCOP superfamily EscU C-terminal domain-like
SCOP superfamily V-type ATPase subunit E-like
SCOP superfamily NMB0488-like
SCOP superfamily YcgL-like
SCOP superfamily PrpR receptor domain-like
SCOP superfamily XCC0632-like
SCOP superfamily SO1590-like
SCOP superfamily YopX-like
SCOP superfamily Trm112p-like
SCOP superfamily LanC-like
SCOP superfamily Sama2622-like
SCOP superfamily YheA/YmcA-like
SCOP superfamily HP0062-like
SCOP superfamily YvfG-like
SCOP superfamily CSL zinc finger
SCOP superfamily Vanabin-like
SCOP superfamily DUSP-like
SCOP superfamily ImmE5-like
SCOP superfamily YefM-like
SCOP superfamily NAP-like
SCOP superfamily Coronavirus NSP8-like
SCOP superfamily CofD-like
SCOP superfamily At5g01610-like
SCOP superfamily YccV-like
SCOP superfamily Kinase-associated protein B-like
SCOP superfamily CalX-like
SCOP superfamily DNA terminal protein
SCOP superfamily Hyaluronidase post-catalytic domain-like
SCOP superfamily EB1 dimerisation domain-like
SCOP superfamily MW0975(SA0943)-like
SCOP superfamily Variant surface glycoprotein MITAT 1.2, VSG 221, C-terminal domain
SCOP superfamily YaeB-like
SCOP superfamily CsrA-like
SCOP superfamily MIT domain
SCOP superfamily Coronavirus S2 glycoprotein
SCOP superfamily Tsx-like channel
SCOP superfamily Rbstp2229 protein
SCOP superfamily Mannose-6-phosphate receptor binding protein 1 (Tip47), C-terminal domain
SCOP superfamily DnaK suppressor protein DksA, alpha-hairpin domain
SCOP superfamily BAR/IMD domain-like
SCOP superfamily TSP type-3 repeat
SCOP superfamily Chlorophyll a-b binding protein
SCOP superfamily 2-methylcitrate dehydratase PrpD
SCOP superfamily Activator of Hsp90 ATPase, Aha1
SCOP superfamily DNA polymerase III chi subunit
SCOP superfamily Rof/RNase P subunit-like
SCOP superfamily Hypothetical protein YfhH
SCOP superfamily ASF1-like
SCOP superfamily ADP-ribosylglycohydrolase
SCOP superfamily Hsp90 co-chaperone CDC37
SCOP superfamily Invasion protein A (SipA) , C-terminal actin binding domain

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Please cite: Gough, J., Karplus, K., Hughey, R. and Chothia, C. (2001). "Assignment of Homology to Genome Sequences using a Library of Hidden Markov Models that Represent all Proteins of Known Structure." J. Mol. Biol., 313(4), 903-919.

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© Copyright 2013 The SUPERFAMILY authors and Julian Gough.