SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|257783981|ref|YP_003179198.1| from Atopobium parvulum DSM 20469

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|257783981|ref|YP_003179198.1|
Domain Number 1 Region: 3-90
Classification Level Classification E-value
Superfamily PTS system IIB component-like 2.41e-20
Family PTS system, Lactose/Cellobiose specific IIB subunit 0.0068
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|257783981|ref|YP_003179198.1|
Sequence length 94
Comment PTS system lactose/cellobiose-specific transporter subunit IIB [Atopobium parvulum DSM 20469]
Sequence
MAIQKILCCCGSGLGSSLMVEMQIQDVLNELGISGVEVEHSTVSDVTPGAADLFIVARDL
EDFIADIPDSEKIILSNILDKDEMKEKLTEKFGL
Download sequence
Identical sequences C8W919
WP_012808267.1.33702 gi|257783981|ref|YP_003179198.1| 521095.Apar_0171

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]