SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|150395452|ref|YP_001325919.1| from Sinorhizobium medicae WSM419

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|150395452|ref|YP_001325919.1|
Domain Number 1 Region: 26-325
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 8.83e-73
Family L-arabinose binding protein-like 0.0000017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|150395452|ref|YP_001325919.1|
Sequence length 329
Comment rhamnose ABC transporter periplasmic rhamnose-binding protein [Sinorhizobium medicae WSM419]
Sequence
MKILKSLMVTAAVTAALMANAAHAENKKIALVVKALGIGFFEAANKGAQEAAKELGDVEI
IYTGPTSTTAEGQIEVINSLIAQKVDAIAVSANDTDALVPALKKAMDRGIKVISWDSGVA
KEGRMMHLNPSSSPLIGNMIIKLAADNLPEGGDVAVLSASATATNQNTWIAEMKKVQGNY
KGINVVATVYGDDLADKSYRETQGLIQSHPNLKAIIAPTSVGIVAAAQAVTDAGKIGQIN
VTGLGLPSEMAGHVKSGASKSFAIWNPIDLGYSATMIAYELINGAEAKPGAELKMGRMGA
VKLDENNEGAMADPFVYDASNVEEFAKIF
Download sequence
Identical sequences A6U604
WP_011974435.1.29075 WP_011974435.1.31871 WP_011974435.1.61285 WP_011974435.1.7720 WP_011974435.1.89664 YP_001325919.1.44884 366394.Smed_0225 gi|150395452|ref|YP_001325919.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]