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Domain assignment for gi|150395910|ref|YP_001326377.1| from Sinorhizobium medicae WSM419

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|150395910|ref|YP_001326377.1|
Domain Number 1 Region: 6-319
Classification Level Classification E-value
Superfamily Tex N-terminal region-like 5.1e-109
Family Tex N-terminal region-like 0.0000000318
Further Details:      
 
Domain Number 2 Region: 320-468
Classification Level Classification E-value
Superfamily Ribonuclease H-like 2.43e-49
Family Tex RuvX-like domain-like 0.00000152
Further Details:      
 
Domain Number 3 Region: 469-557
Classification Level Classification E-value
Superfamily RuvA domain 2-like 4.56e-27
Family Tex HhH-containing domain-like 0.00015
Further Details:      
 
Domain Number 4 Region: 636-722
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 2.01e-25
Family Cold shock DNA-binding domain-like 0.0000524
Further Details:      
 
Domain Number 5 Region: 560-630
Classification Level Classification E-value
Superfamily RuvA domain 2-like 9.34e-20
Family Tex HhH-containing domain-like 0.00011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|150395910|ref|YP_001326377.1|
Sequence length 768
Comment RNA-binding S1 domain-containing protein [Sinorhizobium medicae WSM419]
Sequence
MVTTARPIAAIIASEIKASAAQVAAAVELLDGGATVPFIARYRKEATGGLDDTQLRVLSE
RLTYLRELEARRASILDSIRSQDKMTDELERKIEGAVTKAELEDIYLPFKPKRRTKAEIA
RERGLGALADAILSDRSTAPAERAAAFLTADVPDAKAALDGARDIIAEGMTENAELLGQL
RSYMRGAAFLRARVVGGKQESGAKFSDYFDHSERWATVPGHRALAMLRGWNEEVLSVDIV
VDEDAAPSHRPIERMIAAAYSVGDRLPGDKWLLEVIGWTWRVKLSLSLSLDLMRELRERA
EEEAIRVFARNLKDLLLAAPAGSRPTMGLDPGIRTGVKVAIVDGTGKLLDTSTVYPFPPK
NDIRGTQAELAALVRKHKVELIAIGNGTGSRETEKLVADMLAAMPAPKPTKVIVSEAGAS
VYSASETAAAEFPGLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVDQSKLSR
SLDAVVEDAVNAVGVDLNTASAPLLARVSGLGKSSAEAIVAHRDALGAFASRKDLLKVPR
LGARTFEQCAGFLRITNGSEPLDASAVHPEAYGVAKKIVAACGRDVRSLMGDSAELKKLD
PRIFVDERFGLPTVKDILAELEKPGRDPRPSFKTATFAEGIDDIKDLKVGMRLEGTVTNV
AAFGAFVDIGVHQDGLVHVSQLADRFVKDPHEVVKAGDVVHVRVTEVDVARKRIGLSMRK
EGGAETPREARGTAPNGGNRGAPARPQPPQQPAQGAFGEALIAAMKKK
Download sequence
Identical sequences A6U7B2
366394.Smed_0686 gi|150395910|ref|YP_001326377.1| WP_011974888.1.29075 WP_011974888.1.89664 YP_001326377.1.44884

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