SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|238916395|ref|YP_002929912.1| from Eubacterium eligens ATCC 27750

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|238916395|ref|YP_002929912.1|
Domain Number 1 Region: 11-437
Classification Level Classification E-value
Superfamily Pectin lyase-like 2.19e-87
Family Galacturonase 0.0022
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|238916395|ref|YP_002929912.1|
Sequence length 458
Comment glycoside hydrolase family 28-like polygalacturonase [Eubacterium eligens ATCC 27750]
Sequence
MKKVNFDVKLPAFVERIVYVDNYGARPYCYTIEDASRNADAINRAINYISEKGGGTVVIP
DGIWFTAPIEIKSDVELRIEKNAILKFSKDIDQYPLIITNYEGQECIRAKSPITAENAIN
IGITGGGVIDGSGDMWRPIKQFKITDRQWEALMKKSQYIIDTKGGGIWMPTESSFKGNEH
NIQLDAENALEKASEYYDFYRPVMVSLRHCKRILLDGVTFKNSPAWNIHPFFCKNLTVRN
VTVSNPYYAQNGDGIDVESCKKVHIHNCTFETGDDAICLKSGKNAVARQIEGPCEDVYIH
DCLVNEGHGGFVIGSEMSRGIKNVLVENCTFLGTDVGVRIKSALGRGGVIENINIKNINM
VDIKEQAIILTMSYVLNSLNRDEEINGIDKDDIPYFKNINFEGINCLGAKEAVVIEPIKD
MPETITDIHIKASSFVTSGENRVGCDCLTSEQTTYEIL
Download sequence
Identical sequences C4Z3J6
WP_012738701.1.74791 gi|238916395|ref|YP_002929912.1| 515620.EUBELI_00449

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]