SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|383760674|ref|YP_005439658.1| from Selenomonas ruminantium subsp. lactilytica TAM6421

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|383760674|ref|YP_005439658.1|
Domain Number 1 Region: 134-233
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 3.13e-24
Family Replication initiation protein 0.0046
Further Details:      
 
Domain Number 2 Region: 7-126
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 0.0000000000114
Family Replication initiation protein 0.077
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|383760674|ref|YP_005439658.1|
Sequence length 409
Comment putative replication initiator protein [Selenomonas ruminantium subsp. lactilytica TAM6421]
Sequence
MDDRRPAIYQANPLIEARKPMNALEMRLFMLALQDVNPHLSANDKYYDKFFKETHILPGE
LKKIMGNGAYIPLLDEACDRLTSRNVCIREGEDKFVYYPIFSFIQYEKGDGLRIQFNNKM
RELILDIFESGYPYTKISMKQIFYLGSAYAMRLLEIMLQYQGMKRNNIITRTIQLEELRF
MLNVEEDKYPRINDFKRFVLDIATNEINANTQYSIRYEAEKSGRKIVAFSFYMDCSNLVS
NEEIVEEDIKLEMPPAKKKRYGLSKHAINTLTTICGSNEEFELRMEYALQLAETRKPENL
QGFLYNAIKDNYRQQDLDAKAAIEREMQAIEENKEWEQVAAKMFAGEIGIDEERPEIPFD
LNNPMELAIVKLIKKALQDRMMDFTTRSRLEDHNMSVSRFIELYGNTIA
Download sequence
Identical sequences I0GVJ9
gi|383760674|ref|YP_005439658.1|NC_017077 WP_014431005.1.93961 gi|383760674|ref|YP_005439658.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]