SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|146308673|ref|YP_001189138.1| from Pseudomonas mendocina ymp

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|146308673|ref|YP_001189138.1|
Domain Number 1 Region: 844-913
Classification Level Classification E-value
Superfamily C-terminal effector domain of the bipartite response regulators 2.55e-20
Family GerE-like (LuxR/UhpA family of transcriptional regulators) 0.0041
Further Details:      
 
Domain Number 2 Region: 470-807
Classification Level Classification E-value
Superfamily TPR-like 0.00000000354
Family Transcription factor MalT domain III 0.0047
Further Details:      
 
Domain Number 3 Region: 26-189
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 0.00000000638
Family G proteins 0.067
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|146308673|ref|YP_001189138.1|
Sequence length 914
Comment regulatory protein LuxR [Pseudomonas mendocina ymp]
Sequence
MTDLSRSPGFPYAPASPVEARFYRPPLPAGHVPRPRLCQRLEEGLQGRLLLVCAPAGFGK
SSLAIEFCEGLPEHWHSLWLGLSERDQDPGRFLERLLQGLQQFYPALGEEALGLLKMRQR
HQPFAFEQWLDGLLDELADELDDGQPLLLVLDDYHLAQGPVLDRCLQFFLNHLPPGVLLL
VTSRQRPDWHLARLRLSRQLLELNEQDLRLTTGEVDALLSSQGARLQRPQVADILQRSEG
WVAGLRLWLLAVEELDGDAQEDLALHGGEGLIREYLLEEVIERQPPEVQQFLYETACLER
FCAGLCDAVRDSHDSAAIIRQLQANQVFLVPLDEQGQWFRYHHLFSDLLNARSLEGQVRS
QGGAHLRACRWFAAQGMLDSAIEQALLAGQADVAASLVQNLSEEQMLAEQNIAMLLRWKT
NLPDDLLASTPRLIMLYGWALALACQLDAAQELLEQLGRFLPAADPLSQRSLLAQWQALD
GVIARGRGDGARAEQQCSEALAGLPAERYGPHFMCLSTLANLAMVRGDLWRARGLNREAL
ELAQRIDNPLFEALAHYERARVLQARGEVLRALSEVRQGLAHLQGLPVQRSYSVRARLTL
YEGYLLSLRLQPRAAEQLQAGIAEARSCRDVGVLIGYCVLACLEGRRGRPAEAFALLGEA
ERLMHVWDVPAIYYLAMITLIKCELWLRQGQVELAAAWLPQLAETYGDQGRALAPEFHPQ
LALHIDLQQAALERLQGDVEAAERRLRALQQQAQGLGGQLVGLMAQAQLAQLLRQTGRER
EAQQQLDGCLEVAQGGALLPFVELLEHQPQWLRERLQLRPACPQRDALLAQLPAAREADE
DVAPEESGPTEKLSGREMAVLQLIARGCSNQEISERLFISLHTVKTHARHINSKLGVERR
TQAVARAKGLGLLR
Download sequence
Identical sequences A4XYJ0
gi|146308673|ref|YP_001189138.1| 399739.Pmen_3658 WP_012019607.1.24137

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]