SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|282163529|ref|YP_003355914.1| from Methanocella paludicola SANAE

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|282163529|ref|YP_003355914.1|
Domain Number 1 Region: 31-289
Classification Level Classification E-value
Superfamily PLP-binding barrel 3.05e-75
Family Alanine racemase-like, N-terminal domain 0.00000107
Further Details:      
 
Domain Number 2 Region: 269-422
Classification Level Classification E-value
Superfamily Alanine racemase C-terminal domain-like 4.6e-52
Family Eukaryotic ODC-like 0.0000459
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|282163529|ref|YP_003355914.1|
Sequence length 426
Comment diaminopimelate decarboxylase [Methanocella paludicola SANAE]
Sequence
MNYEIPGHLEVKKGHLHIGGVDTVQLAQQYGTPLYVTNEDRLRDNYRRFAKAFKGVPLFF
AAKSNNSLVVQRILAQEGAGADAFSDGEIYLARLAGIPAQKILFTGNSKTDAELAYAVEA
GVMVSIDSHDELISLSHIAKAHGKTMNVAFRVNPEISGDTHPKLATGLKISKFGIPRQEI
VDTYKEASKLPGINPVGIHCHIGSQILEVSPYVETVNRMMDLVAQISKFVDLEFVDIGGG
FGIPYQKDVKAPTPQDYAKAILPLYRKRCKEIGISPELHIEPGRYIVADTTVLLTHVNTV
KKAYSTFIGVDAGFNTLIRPAMYDSYHEVVVANKADKKSASTYTVAGPICESGDILARDR
KLPQVKKDDIIALLDAGAYGFCMSSQYLARPRSAEVLIHDGQAELIRKRETYDDLIQNQL
IPGRLL
Download sequence
Identical sequences D1YWV9
gi|282163529|ref|YP_003355914.1| 304371.MCP_0859

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]