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Domain assignment for gi|161527856|ref|YP_001581682.1| from Nitrosopumilus maritimus SCM1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|161527856|ref|YP_001581682.1|
Domain Number 1 Region: 6-1259
Classification Level Classification E-value
Superfamily beta and beta-prime subunits of DNA dependent RNA-polymerase 0
Family RNA-polymerase beta-prime 0.00000000000155
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|161527856|ref|YP_001581682.1|
Sequence length 1263
Comment bifunctional DNA-directed RNA polymerase subunit A'/A'' [Nitrosopumilus maritimus SCM1]
Sequence
MSIQAVKAIDGIRFSVWSPTEIRKYSVAEITAPETYDEDGMPVQGGLMDGRLGTLEPGQK
CLTCGNTAARCPGHFGHLELAEPVLHIAFIDNIYKLLQSTCRSCARLKVPQEDLNVFKTI
KEKHAAYTVISQKRIPEQIIEKAKKAKECPHCGKTQYELIFTKPTIFVEKTEIGEHRLLP
ITIRERFSQIIDEDLELLSYDPVTARPEWFVLQAFPVPPVTVRPSIILETGIRSEDDLTH
KMVDIIRVNQRLKESKDAGTPPLIVQDLVDLLQYHTTTYFDNEVSGIPQAHHRSGRPLKT
LTQRLKGKEGRFRGSLSGKRVDFSSRTVISPDPNLDLSEVGVPEAVAMKLTIPEIVTEWN
IERMRKLVINGPEKFPGVNYIVRPDGVKIRLDFVEDRSTIAETLEIGYLVERHLADGDIV
MFNRQPSLHQMSIMAHYVRVLPGKTFRLHPSVCPPYNADFDGDEMNLHVPQSEEARAEAI
LLMRVQDQLISPRYGGPIIGALRDFVTGAYLLTKDDTVLTVQEFSNLAMLGGYTDPLPKP
GTKTKDGPAYTGKQLFSLFLPKDFNYVITSKWSKGTKGQAKDVVIKNGELISGVIDKSSI
GAEEPESVLHRIAKDYGNAVGKSFLNSILIMVKQFITHYGFSYGYGDLIVPDKDKQQILD
DIQGTYDIVSDLTDQYKKGTLKLTRGMKPEEALEAYIVNELGKARDKAGSSANDCLPADN
AGKIMATTGARGSSLNVGQMAGALGQQSRRGNRLHEGYNNRALTHYQEHDDNPDAHGFVK
SNYREGLSALEFFFHAMGGREGLVDTAVRTQQSGYMQRRLINALEHIRLEYDGTVRDPHG
HIVQFLYGEDGIDVQKSDHGEAFNPSRLIESQKIIDSGKKATKEEIETLAKKYTKTFNPR
LTKLVTDALQNSELSKDGVEAVCKKGLLLYNKAKVEPGQAVGIITAQSIGEPGTQMTLRT
FHFAGIKERNVTLGLPRLIELVDARKKPVTPTMDIYLDDESKKSREKAIEVARNVLQTKV
SALIADSETDYATEIKLILSENRLRERGCSIAEVEAALSSNKKFKMETTGELITLKLVEE
SDTATVIAIRNKVLNTTVKGVPDIERVTLVQKDDEWVIQTTGSNVAKVLEVKGIDKRNVR
TNNVFEIAGTLGIEAARNALINELNSTLEDQGLEVDNRYIMLVADLMCSRGYMQQIGRHG
IAGTKDSVLARAAFEITVPTIAHAALGGEIEQLKGITENVIVGSNIPIGSGTVDLYMQVS
KKK
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Identical sequences A9A460
436308.Nmar_0348 gi|161527856|ref|YP_001581682.1|

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