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Domain assignment for gi|294102013|ref|YP_003553871.1| from Aminobacterium colombiense DSM 12261

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|294102013|ref|YP_003553871.1|
Domain Number 1 Region: 209-296
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 3.06e-26
Family Cold shock DNA-binding domain-like 0.00078
Further Details:      
 
Domain Number 2 Region: 279-367
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.12e-25
Family Cold shock DNA-binding domain-like 0.0011
Further Details:      
 
Domain Number 3 Region: 368-453
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 1.12e-21
Family Cold shock DNA-binding domain-like 0.00097
Further Details:      
 
Domain Number 4 Region: 15-126
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.0000000000000821
Family Cold shock DNA-binding domain-like 0.011
Further Details:      
 
Domain Number 5 Region: 131-204
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 0.00000000117
Family Cold shock DNA-binding domain-like 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|294102013|ref|YP_003553871.1|
Sequence length 503
Comment RNA binding S1 domain-containing protein [Aminobacterium colombiense DSM 12261]
Sequence
MMEEMNNDVKTTENFENMDMESMLEKYAGEEIHKGKVVTGTIVGANEDGWLVDVGYKCEG
FLPRREWTHKILVEEEEEPSINDEIQVQVINIRHGEDAQLLVSRWRCEFDRRWAELESFV
SSHDLISVRGIRKVKGGLMVNCFNLEGFIPISHLAEEGRGVNPGKFVGEVFDVKLLEKDR
RKRRLVLSRRMLVEEAVEEQRNKFYTTVSEGDILEGRVSSITSFGAFINLGPIDGLVHIS
ELSWKRNVKPKEVVKKGETVKVKVIGIEQENNRVSLSIKQTQPDPWSIVEENWKIGDKAS
GVVTNVTDFGAFVEVGPGIEGLIHIGDLSWARIKHPRDVLKKGQNVEVVVLDVDAEKKRM
SLGYKQLNDPWTGIEERYTKGQDITVKVVRLADFGAFVEVEEGVEGLIHISQLSTKRVDK
PEDVLSEGEEVLARVIEINPAERRMRLSISALFEEEIRKNREEEKKKRLAQKAEESRQKQ
QPTFHEEEPSITIGDVLKDFLNR
Download sequence
Identical sequences D5EF15
gi|294102013|ref|YP_003553871.1| WP_013048410.1.58668

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