SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|284035449|ref|YP_003385379.1| from Spirosoma linguale DSM 74

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|284035449|ref|YP_003385379.1|
Domain Number 1 Region: 277-582
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain III 1.83e-79
Family DNA repair protein MutS, domain III 0.00000123
Further Details:      
 
Domain Number 2 Region: 585-821
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 2.66e-60
Family ABC transporter ATPase domain-like 0.00000074
Further Details:      
 
Domain Number 3 Region: 12-121
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain I 3.14e-38
Family DNA repair protein MutS, domain I 0.0000522
Further Details:      
 
Domain Number 4 Region: 121-276
Classification Level Classification E-value
Superfamily DNA repair protein MutS, domain II 4.19e-38
Family DNA repair protein MutS, domain II 0.0005
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|284035449|ref|YP_003385379.1|
Sequence length 886
Comment DNA mismatch repair protein MutS [Spirosoma linguale DSM 74]
Sequence
MKSTTAAKPQVKKNETPLNRQYNQIKAKYPGALLLFRVGDFYETFGEDAVRASKILGITL
TKRNNGGANEELAGFPHHSLDTHLPKLVRAGERVAICDQLEDPSVAKGIVRRGVTELVTP
GVSFNDNVLDTRRNNYLAAVHFGKADDTFGISFLDISTGEFLASQGNSAYVDKLLQSFNP
SEVLYCKRNRQEFGSLFGDKFHTYTLEDWAFTYDFGYNFLKQHFQTTSLKGFGIEGMPDG
IIAAGVIMHYLNETEHKDLQHITRVTRLEEDRYVWLDRFTIRNLELTVAQQEGGVPLIQI
LDQTVTPMGARLLRKWLSLPLKEKALIDERLNMVDLLVNDLDLADAMVNHLRQIGDLERL
VSKVAVRRISPRELLQLKRSLQHVLPIKELLITALSQNELAGLHAGSLKKYADQLNPVAF
LLDRIETELREDPPTLSNQGGMIKPGINAELDELTAIAYSGKDYLLQLQEREVQRTGITS
LKIAYNKVFGYYLEVTHAHKNRVPEDWIRKQTLVNAERYITPELKEYEDKILNAEEQIFQ
IEARMFNELVIAAGEYVGAIQQNARVLSVLDVLASFGRVAVKNKYVRPSINESKVLDIKD
GRHPVIEQQLPPGEPYIPNDVYLDDETQQIIIITGPNMAGKSALLRQTALIVLMAQSGSF
VPASSAEIGIVDKIFTRVGASDNLSRGESTFMVEMTETASILNNLSERSLILMDEIGRGT
STYDGVSIAWSITEYLHNKTDCRPKTLFATHYHELNDLAADNHRIRNYNVSVKELGNKVI
FLRKLKEGGSEHSFGIHVAQMAGMPAQIVSRANEILKQLESSHQRETNKEKIREAVPQER
ELALRIIESGDPKSEAIKEKLRAIDVNRLTPIEALLKLNELLKMAE
Download sequence
Identical sequences D2QFA3
gi|284035449|ref|YP_003385379.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]