SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|167033236|ref|YP_001668467.1| from Pseudomonas putida GB-1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|167033236|ref|YP_001668467.1|
Domain Number 1 Region: 93-296
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 1.25e-33
Family Phosphate binding protein-like 0.00018
Further Details:      
 
Domain Number 2 Region: 7-90
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 1.09e-16
Family LysR-like transcriptional regulators 0.0018
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|167033236|ref|YP_001668467.1|
Sequence length 300
Comment LysR family transcriptional regulator [Pseudomonas putida GB-1]
Sequence
MNRNDLRRVDMNLLVLFEALMIERNLTRVGEKLFITQSTVSAALARLRELFDDPLLIRSG
RAMEPTPRAMQIFAELGPAMDVISAAISRAREFDPTNSSNVFRLGLSDDAEFGLFPALLQ
ALREEAPDISVVVRRANFLLMPGLLASGEISVGVSYTTDLPATAKRRKLRDIGVRVLRAD
DRPGPLTLDEYCARPHVMVSFSGDMSGNIDLDLARIGRCRKVVLAVPQFGSLRALLRNTE
MIATVPDYAACALADDGSLRADPAPFDITEAELSMVWSGAQDNDPAERWLRERILQFMAR
Download sequence
Identical sequences B0KNK8
76869.PputGB1_2230 gi|167033236|ref|YP_001668467.1| WP_012271879.1.13892 WP_012271879.1.54657 WP_012271879.1.65540 WP_012271879.1.66485 WP_012271879.1.81634

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]