SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|167031346|ref|YP_001666577.1| from Pseudomonas putida GB-1

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|167031346|ref|YP_001666577.1|
Domain Number 1 Region: 25-301
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like II 9.05e-76
Family Phosphate binding protein-like 0.01
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|167031346|ref|YP_001666577.1|
Sequence length 314
Comment choline ABC transporter periplasmic binding protein [Pseudomonas putida GB-1]
Sequence
MHSLIRRSLLTLALSSIATSPLFAAEPAACKNVRLGVVNWTDVIATSAMAQVLLDGLGYQ
TKQTSASQQIIFAGIRDKRLDMFLGYWNPIMTQTITPFVDANQVKVLDKPSLEDARATLA
VPKYLYDKGLKTFADIHKFEKELGGKIYGIEPGSGANTQIKAMITKNQFDLGQFQLVESS
EAGMLAAVDRAVRRKEAVVFFGWAPHPMNVNIDMAYLGDSQDALGPDEGRATVWTVTAPD
YAERCPNAHRLLANLNFSAEDESRMMQPLLDHKDALESARQWLKDHPDDKARWLEGVTTF
DGKPAADNLKLTAN
Download sequence
Identical sequences B0KI55
WP_012270104.1.81634 76869.PputGB1_0328 gi|167031346|ref|YP_001666577.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]