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Domain assignment for gi|171058362|ref|YP_001790711.1| from Leptothrix cholodnii SP-6

Domain architecture


Domain assignment details

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No Significant Hits.

Weak hits

Sequence:  gi|171058362|ref|YP_001790711.1|
Domain Number - Region: 225-281
Classification Level Classification E-value
Superfamily LysM domain 0.0432
Family LysM domain 0.0055
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|171058362|ref|YP_001790711.1|
Sequence length 883
Comment putative transmembrane protein [Leptothrix cholodnii SP-6]
Sequence
MGDALKTDMTRTGRLALKQVAAAVAVTAAICAAPSAWALSLGRLTVQSALGEGLRAEIDV
TSLTPDEASNLRVRVAPPDSYRIAGVDYNPVLPATSVTLQRRADGTPFLRISSDQSVQEP
FVDVILEISWSSGRLLREYTLLFDPPATARAPSAPAPAIAAAPAPAPTRVEPPVQVPAPV
AAAPTPAPTAPAPALSPAPVAPARGELALRKPAAEPDASASSPPTEYRVKRGDTLTSISS
KLQSGGASLDQALVGLFRGNPQAFTGDNMNRLKAGVVLNVPSSEQMTAIDAQEARQIIQA
QSADFNAYRQRLASSVPEPKDDTAPARQATGTVRAEVQDNKQSQSQTQDRLRLDKGKPAT
GAVVASAEDAIAKERAAKEAAARATEIQRNVEELKKLQAASEAQMARKPAAAVAASSPLP
ALSVGAAPEPAPVAASAASAPPAVVVAAAEPAASQASAPEAAAAASDAASPAAMAVAPAA
SVMPSAPAPEQAADDQPSLIDSLSENPWVLPGAGLVLALLAGLGYYRLRGKGKEDAGVTS
FLESRLQPDSFFGASGGQRIDTRDASGAPSSMSYSLSQIDAIGDVDPVAEADVYLAYGRD
LQAEEILKEAMRANPERLAIRTKLLEVYAKRRDTKGYELLAGELYGLTGGQGEDWVRAQE
LGRSIDPENPLYEPGGQPGSGSSADVGSEMLGASTMPQSIVPSPSRFEHSVPDLDLTGDI
PSGSSADVDLDISMPARMDEAAPSVPSAFSSAPAGFDAAPSVPGSNLDSGTHSLDFDLHD
LPQFDAPAAAPSSRPSSIDLADISLDLDAAPSVPANLASTDTMSAFDVGEDDGSDPLARK
LELAEEFNQIGDYEGARDLLQEVIENADGALKAKAQAMLDGLA
Download sequence
Identical sequences B1XY45
WP_012346707.1.27902 395495.Lcho_1679 gi|171058362|ref|YP_001790711.1|

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