SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for EG:BRADI2G23187.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI2G23187.1
Domain Number 1 Region: 482-575,610-650
Classification Level Classification E-value
Superfamily RNase III domain-like 4.88e-36
Family RNase III catalytic domain-like 0.0011
Further Details:      
 
Domain Number 2 Region: 263-375,421-457
Classification Level Classification E-value
Superfamily RNase III domain-like 5.41e-32
Family RNase III catalytic domain-like 0.0087
Further Details:      
 
Domain Number 3 Region: 132-204,235-243
Classification Level Classification E-value
Superfamily PAZ domain 0.000000000000298
Family PAZ domain 0.0041
Further Details:      
 
Domain Number 4 Region: 612-719
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.000000645
Family Double-stranded RNA-binding domain (dsRBD) 0.016
Further Details:      
 
Weak hits

Sequence:  EG:BRADI2G23187.1
Domain Number - Region: 766-859
Classification Level Classification E-value
Superfamily dsRNA-binding domain-like 0.0215
Family Double-stranded RNA-binding domain (dsRBD) 0.015
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI2G23187.1   Gene: BRADI2G23187   Transcript: BRADI2G23187.1
Sequence length 872
Comment pep:novel chromosome:Brachy1.0:2:20731460:20735582:-1 gene:BRADI2G23187 transcript:BRADI2G23187.1
Sequence
MVKASVSPCGLLELDVQQMEKAKLFQALIFNGLFGKLFTGSKSSNSPREFILNKDDSLIW
NNANMYLLLPMDPTLESHDSFCINWRLIDEAATAVGLMRKVHSDDKMNLLAILDIDQNDG
DLIHLANTSCEAHVLRNVAVLAVHTGKIYTSLHVTDLSSNSTFDGVSDKKETGFKTFKEY
FEKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKIRDEGNGENKNNGTTDVIKVNNRVHMPP
ELLIPLNLPEDILRAFYLFPSLMYRMETLMLASQLRSEVAYDSNISSFLILEAITTLRCS
EDFSMERLELLGDSVLKYAVSCHLFLKFPNKHEGQLSSSRTDIISNAALYRLGIEHKIQG
YIRDAAFDPRRWLAPGQLTNRPFHCKCPVDSEVVTKDIHVIDDKPTIKIGQACDKGHRWM
CSKTISDCVEAIIGAYYVGGGLRAAVAFLRWLGVDAEIEEELIMQTILSASMQTYLPKID
LTEALGAKLGYAFSVKGLLLEALTHPSHQESEERYSYQRLEFLGDAALDILLTWHLFNSH
KDTDEGELTDLRSASVNNENFAKVAVKHKFHHFLQHSSEILLDQITEYANSLENSSMDEI
NLSSDAPLRGPKVLGDIVESIAGAILIDTKLDLDVVWGVFKPLLSPIVTPENLELPPFRE
LLEWCNRNGYFLGIKCTDGEKLQAILDVQLKDMLVVRRGFGKNKKDAKAHAASMLLKDLE
EKGLIISKNAIRMEQFEKQWGSANHCHNMFDAVDTQVLTPARGKEPLDKPVKTSKGGPRI
ALYELCKKLQWPAPKFVSVKTQPSAAGGSSMKATTQEFSFASNITLHVPNSDVISLRGDG
FADKKSSQDSAALLMLHELQRQGRLQVQEVGP
Download sequence
Identical sequences I1HIP9
EG:BRADI2G23187.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]