SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for EG:BRADI4G16130.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI4G16130.1
Domain Number 1 Region: 287-632
Classification Level Classification E-value
Superfamily RNI-like 2.9e-59
Family Cyclin A/CDK2-associated p19, Skp2 0.042
Further Details:      
 
Domain Number 2 Region: 32-286
Classification Level Classification E-value
Superfamily L domain-like 3.74e-53
Family Polygalacturonase inhibiting protein PGIP 0.0052
Further Details:      
 
Domain Number 3 Region: 701-852
Classification Level Classification E-value
Superfamily Protein kinase-like (PK-like) 1.14e-22
Family Protein kinases, catalytic subunit 0.0021
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI4G16130.1   Gene: BRADI4G16130   Transcript: BRADI4G16130.1
Sequence length 865
Comment pep:novel chromosome:Brachy1.0:4:16808246:16811461:-1 gene:BRADI4G16130 transcript:BRADI4G16130.1
Sequence
MEGAITFFCFLLFFLCFHALVSQGSSNVTMNDELSLLSFKSMLSTGSSEGLMASWNSSSH
HCSWPGVVCGSLRHPERVVMLRLRSANLAGPVSPFLGNLSFLRELDLGNNHLTGQIPPEL
GLLAKLQVLNLSLNSLQGSIPADLGGCTNITMLDLSGNKLQGEIPTQIGASLKNLFRLNL
GENVLSGQIPGSLAELPVIGFLSLRLNKFSGEIPQALGNLSSLRFLGLGGNTLSGAIPSS
LGMFYRLSFLILGSNSLTGVIPASIWNISSLIMFSIGDNKLRGIIPPNAFSTLPNLKRLF
MEFNQFDGHIPSSIANSSGMSLLQLSANIFSGIFPPEIGRLRNLSRLDFAVNLLEAKEPK
DLDFITALTNCSQLQVLALGFNKFEGVLPSSLCNFSTSLWFLYLGHTKMSGSIPKDIGNI
INLQSLYLNNNLLTGTLPSSLNQLKNLCTFIVDENKIHGPIPWTIGNLTELNYFSLRKNA
FSGRLPITFGNLTQLNALDLSSNNFTGSIPSGLFNIPTLSRIFDLSHNNLEGSIQQEIGN
LKNLVEFHAESNKFSGEIPPTLGECQLLQSLYLQNNILTGIIPSLLNQLKGLENLDLSRN
NLSGQIPMFLGNISMLYHLNLSFNSFVGEVPNFGMFANATAISIQGNAQLCGGIRDLHLP
PCSSQVRKKRSLVIPIVVPLSAAIVILSLLCVFLCWRKSTTEIYSTTSMQGHPLISYPQL
VRATDGFSAKNLLGSGAFGTVFKGNIGAQAGQSTSLAAVKVLKLQTPGGLKGFITECEAL
RNLWHRNLVKIITACSSIDNKGNEFKAIVYSFMPNGCLEGWLHPDTNDQLAKHLRILQRV
TILLDVADALDYYIAMGMHQFYIVI
Download sequence
Identical sequences I1IL07
15368.BRADI4G16130.1 EG:BRADI4G16130.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]