SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for EG:BRADI1G50240.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI1G50240.1
Domain Number 1 Region: 152-250
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.08e-21
Family B3 DNA binding domain 0.0011
Further Details:      
 
Domain Number 2 Region: 568-667
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 5.76e-18
Family B3 DNA binding domain 0.0064
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI1G50240.1   Gene: BRADI1G50240   Transcript: BRADI1G50240.1
Sequence length 690
Comment pep:novel chromosome:Brachy1.0:1:48876447:48880546:-1 gene:BRADI1G50240 transcript:BRADI1G50240.1
Sequence
MVSSMQNVKVKEEKCNSMENEKEMNMKEQRGRVNTQKAKKNKEEEQRNEEKGRLGSKTEM
MIEKEQRDMMDKEKAKKDKEEEQRKKEEKEREGCQLRETEEKKKEKKQRERMDMEKETKD
KEDEQEKEVHEYRERKDKQYHERNEEEETTENTFHHFFKVVMPGESTQQLKIPRAFKKYL
ENESSGVVSLRDASGNTWRVGLVANSMELSFVRGWERFFSDHRIHVGDFLVFRYNGQSQF
SVLVFGRSGCEVECAFLPQSYNDWVIEDDEGSMGINVDGTDPHEEDPRNMAKEKDGGDID
MNAGGTDLTREDVGYTLAEGDDKVDMHTNRDVNNPQEEDAGNMAEENDGMDLDTNVGATN
LLEEDPRYTLAGHDKVDTGINTYVTNPQEQDAGNMAKENDGGGMGTNAGGTDVMEEDVGY
ALAKYDDKVDMDTSIDVTNTQELDACNVAGENVGEDMDTNAHRTDLMDDQDAGYALAEDD
KGDMDTIIDVTIPQKEDIVVETNTMVGSIVPVRSRFDWTLFNESNNVPQLGKVFAKVQRV
PEVTSQRRAVIEEEVEYAIEKASHFLSQRSFSFKAMKYSEVYTTYFMIIPEILVKNSLPK
KDMQMTLWDPQGKTWDVSYVYQSRGGVCSAAFATGWGAFSVHNNLEEWDVCVFEVLDSSN
IKVHVHRVVCEITPYIQRPPQLDLNSRSSC
Download sequence
Identical sequences I1H1C4
15368.BRADI1G50240.1 EG:BRADI1G50240.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]