SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for EG:BRADI1G75750.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI1G75750.1
Domain Number 1 Region: 223-519
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.12e-62
Family WD40-repeat 0.0003
Further Details:      
 
Domain Number 2 Region: 1-53
Classification Level Classification E-value
Superfamily RING/U-box 0.000000000000618
Family U-box 0.0024
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI1G75750.1   Gene: BRADI1G75750   Transcript: BRADI1G75750.1
Sequence length 527
Comment pep:novel chromosome:Brachy1.0:1:72560433:72566602:-1 gene:BRADI1G75750 transcript:BRADI1G75750.1
Sequence
MICAISGEVPEEPVVSKNSGLLFERRLIERYIEDHGKCPVTKDELAMDDLVAVKTNKITK
PRPLQAASVPGLLGMFQNEWDALMLSNFALEQQLHTSRQELSHALYQHDAACRVIARLKK
ERDESRTLLAQAERQIPISAAGAAPVAVVTNGKIALDDEVGPDGKKMRPGINPVMIDELT
ECNSMLSAQRKKRQVPPSLASIDALERYTQVSSHPLHKTNKPGILSIDIHHSKDIIATGG
IDTNAVLFDRPSGQVLCTLTGHSKKITSLKFVPWDELLITGSADKTVRIWQGSEDGNYGC
RHTLKDHNAEVQAVTVHATQKYFVTASRDNTWCFYDISTGSCLTQVGEASGQDGYTAAAF
HPDGLILGTGTSEAVVKIWDVKTQSNVAKFDGHVGAVTAMSFSENGYFLATAAVDGVKLW
DLRKLRNFRTISPYDPDTPTSSVEFDSSGSYLAVAGSDIRVYQVANVKMEWNLVKTLPDL
SGTGKVTSVKFGTDAKYVAVGSMDRNLRIFGLPGDEQMEEAKSPVSE
Download sequence
Identical sequences I1H9X7
XP_003558846.1.954 15368.BRADI1G75750.1 EG:BRADI1G75750.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]