SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for EG:BRADI2G42767.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI2G42767.1
Domain Number 1 Region: 83-127
Classification Level Classification E-value
Superfamily F-box domain 0.0000000000366
Family F-box domain 0.0063
Further Details:      
 
Weak hits

Sequence:  EG:BRADI2G42767.1
Domain Number - Region: 193-405
Classification Level Classification E-value
Superfamily L domain-like 0.00068
Family Polygalacturonase inhibiting protein PGIP 0.075
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI2G42767.1   Gene: BRADI2G42767   Transcript: BRADI2G42767.1
Sequence length 532
Comment pep:novel chromosome:Brachy1.0:2:43222483:43224350:-1 gene:BRADI2G42767 transcript:BRADI2G42767.1
Sequence
MDPQRQLRQALLRAGKSLLQAFKEDSDPGIRNSALWSLAASGVDAEMLDVSVFIYAVHHY
IPTPPVSFAAPLAFSGASWVPDGIDRISRLPDDVLCNIISRLPPKDAARTAAIASRWRPL
WRSAPLVLVVSLLLLQGRASAAPRAVTAVVTRILAAHPGPFRCVHLTCSNMDEHRNELEL
WLLLLAAKGIQELTFLNHRWPINLRLPATLFSCASLTRLYLGVWRLPDTAAVPRSAIFLN
LRELGLCFDVMEERDLAFMLERSPVLEILTIIGSQSGVRLRLVSHSLRCVQLGITRLEDI
DVVDAPRLERLLQWDVGQHHVSKNRGKKPSSRIKIGNAPNLRLLGYLEPGDNEIEIRHSV
IVAGTKENIVPSVKIMAIQVQFGVRNALKKVPGYLRCFPNLETLHVQSRRDVEPAGKVNF
KFWQEGDPIKCVLQTMKKVFFHEFRGSRSKVAFLKFVAEKAKVLEKMVILVASGCFSSRV
DVKAKLKPLTSAKWNSKVCKVELFQSPFIEGGDPYFSHRLATDFSCPDPTIR
Download sequence
Identical sequences I1HP56
EG:BRADI2G42767.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]