SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for EG:BRADI3G08400.2 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI3G08400.2
Domain Number 1 Region: 120-232,306-509,566-583
Classification Level Classification E-value
Superfamily WD40 repeat-like 4.12e-32
Family WD40-repeat 0.0067
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI3G08400.2   Gene: BRADI3G08400   Transcript: BRADI3G08400.2
Sequence length 592
Comment pep:novel chromosome:Brachy1.0:3:6583776:6593789:-1 gene:BRADI3G08400 transcript:BRADI3G08400.2
Sequence
MPPPHRQEKQKSASNTGAQGYLRSPHHLAAAPPLASPLPLDLRRRLPPHSPRTFFPLPIS
PAEAAEILAYGVLTAAAPMDPKSPDDRPEPAAAQQPLPLEWRFAQVFGERGAGEDVQEVD
IISAIEFDKSGDHLATGDRGGRVVLFERTDARGNASRTELERQDYVVARHPEFRYKTEFQ
SHEPEFDYLKSLEIEEKINKIKWGQTANNALFILSTNDKTIKYWKVQDKKVKRVSVMNLD
TSQSSDNGTTSSSSASSSRGLPNGGCSEKLYNGTSNDLSFPPGGCTSLRLPVVTGQDLNP
VARCRRVYAHAHDYHINSISNNSDGETFISADDLRINLWNLEINSQSFNIVDVKPANMED
LTEVITCAEFHPTHCNTLAYSSSKGAIRLIDLRQSALCDNHAKLFEEHEAPGSKSFFTEI
IASVSDIKFAREGRHILSRDYMTLKLWDLNMDSGPVATFQVHEHLRPKLCDLYENDSIFD
KFECCLSGDGLRVATGSYSNLFRVFGCTPGSTEATTLEASRNPMRRQVANPTRPTRTLTS
LTRAVRRGGENAGADGNGNSYDFSTKLLHLAWHPTESSIACAAGNSLYMYYA
Download sequence
Identical sequences I1HYV3
EG:BRADI3G08400.2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]