SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for EG:BRADI4G26970.1 from Brachypodium distachyon

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  EG:BRADI4G26970.1
Domain Number 1 Region: 40-323
Classification Level Classification E-value
Superfamily WD40 repeat-like 9.52e-48
Family WD40-repeat 0.0012
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) Protein: EG:BRADI4G26970.1   Gene: BRADI4G26970   Transcript: BRADI4G26970.1
Sequence length 775
Comment pep:novel chromosome:Brachy1.0:4:31955186:31962990:-1 gene:BRADI4G26970 transcript:BRADI4G26970.1
Sequence
MGFVDPAAPLLATCGGDTVKLFDVTVESGDPCVLAYAPAPGNPVNAVKWNHTNLIIASAG
DDKKISLWHKKGKNVGQLPTSTIDRGDDIEESIYSISFSNKGSRYLCSGGSGHIVRIWDL
QRKRCIKWLSGHTDTITGVMYNCKDEHLASISMKGDLILHNLASGARAAELSDPNGQVLR
VLDYSRNSRHILATAGDDGSVHLWDTTARTPKVSWLKQHSAPTSGVCISPSSDKIIATVG
LDKKLYTLDSGSRRVTHTIPHEAPFSSLAYNDDGTILAAGTNSGRVVFYDVRGKPQPLTI
LRAYNSSEAVASLCWQRSKPVIVNENSSSEVALLGGTSEDSILMPDPLPSATPSTLTSGA
GIPSLRSSLTANTSGFLSTSDLSTTEETPYRTRPLSGGPLSKLQAPRGNFSIKDDMDVFS
PLVDVQPFTPSSNSWWDEHGSDETKKDDKHGDKKLSATRKFPYMEGNNEPHPMADWRSIS
NSRQDDASSVSTTPLPSWKSEPSISSPETSTGNALPDRVPHRQQISRFGQSAFQTGSLAF
GGLHDSGSTTSLSLKGSLTSNILMNLQNKGVLSNAHSPLETSSASLQSSISSSFMSKTLA
SVSSDLPGAAQSSSSWKPSTFTDKLSTCSVFSEGLASAFGSPKSKKTGAETKDELISGLL
SRQEAATASSSGSLLATNGVVPPQFPTSGLSADQQGASSFSLQYVQRMLEESLGSVHKSI
HEDVRNLHIELLRQFHMQEMETSGVMNLVLEKLEGLTKEVQQLRRENQQLRHQLL
Download sequence
Identical sequences I1INZ7
EG:BRADI4G26970.1 XP_003577913.1.954 15368.BRADI4G26970.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]