SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for orange1.1g006797m|PACid:18132058 from Citrus sinensis v154

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  orange1.1g006797m|PACid:18132058
Domain Number 1 Region: 75-244
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 1.96e-45
Family Ypt/Rab-GAP domain of gyp1p 0.0023
Further Details:      
 
Domain Number 2 Region: 221-336
Classification Level Classification E-value
Superfamily Ypt/Rab-GAP domain of gyp1p 1.2e-24
Family Ypt/Rab-GAP domain of gyp1p 0.012
Further Details:      
 
Weak hits

Sequence:  orange1.1g006797m|PACid:18132058
Domain Number - Region: 473-519
Classification Level Classification E-value
Superfamily PspA lactotransferrin-binding region 0.0732
Family PspA lactotransferrin-binding region 0.0094
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) orange1.1g006797m|PACid:18132058
Sequence length 630
Sequence
MMNFRVKKRKVMKGEQITKSGDHLPSIDEARSSGGESDEDIKEKVCVTVTSYGSVNGLDD
KGSQEDEVSPEPYFPWKEELESLVHGGVPKDLRGELWQAFVGVKARRTESYYQDLLAQEI
NADESKEHDNSFGVPRKWKKQIEKDIPRTFPAHPALNEDGRDSLRRLLLAYALHNPSVGY
CQAMNFFAGLLLLLMPEENAFWTFVGIIDDYFDGYYTEEMIEAQVDQLVFEELIRERFPK
LVHHLDYLGVQVTWISGPWFLSIFVNILPWESVLRVWDVLLYEGNRVMLFRTALALMELY
GPALVTTKDAGDAITLLQSLAGSTFDSSQLVFTACMGYLTVTEARLQELREKHRPAVLLV
VEERSKGGRVWKDPNGLATKLYSFKHDPELLIEENKGTEGSDDALADGDLSYKEPAANLD
EMLSGLSVNSELEGRDLQEQVVWLKVELCSLLEDKRSAVLRAEELETALMEMVKQDNRRQ
LSARIEQLEQEVAELQQSLADKREQESAMIQVLMKVEQEQRITEDARRNAEQDARAQRYA
VNVLEEKYEKAMASVAQMEKRAVMAESMLEATLQYESGQAKAVSSPRAVHNQSSVDSPKR
RIGLFGLAWRDRNKGKPSNLEESSDRKSTN
Download sequence
Identical sequences orange1.1g006797m|PACid:18132058 orange1.1g006813m|PACid:18132060 orange1.1g006815m|PACid:18132059 orange1.1g006818m|PACid:18132057 orange1.1g006820m|PACid:18132056

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]