SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|428217345|ref|YP_007101810.1| from Pseudanabaena sp. PCC 7367

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|428217345|ref|YP_007101810.1|
Domain Number 1 Region: 120-216
Classification Level Classification E-value
Superfamily Ribosomal protein S3 C-terminal domain 2.49e-37
Family Ribosomal protein S3 C-terminal domain 0.0000182
Further Details:      
 
Domain Number 2 Region: 2-97
Classification Level Classification E-value
Superfamily Prokaryotic type KH domain (KH-domain type II) 3.14e-30
Family Prokaryotic type KH domain (KH-domain type II) 0.00013
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|428217345|ref|YP_007101810.1|
Sequence length 251
Comment 30S ribosomal protein S3 [Pseudanabaena sp. PCC 7367]
Sequence
MGQKVHPNGLRVGVIRPHLSRWFADGDRYPILASEDFEIRKYITKTLDNAGVADVRIERK
ADQVDIEIRTARPGVVVGRGGSGIDQLRQGLLKHLGKVGTKEKTGTSQIRINVVEVARVD
AEAALIGEYIAQQIERRVSFRRVVRQAIQRAQRAGVEGIKVQVGGRLNGAEIARTEWVRE
GRVPLHTIRADIDYAYRTASTVYGIIGVKVWIFKGEIEPGQEAAAPAQPQPRRRQQQRRR
PQFEDRSGAEG
Download sequence
Identical sequences K9SFJ9
WP_015164355.1.5078 gi|428217345|ref|YP_007101810.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]