SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|470178412|ref|YP_007564456.1| from Ilumatobacter coccineus

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|470178412|ref|YP_007564456.1|
Domain Number 1 Region: 42-128,208-232,260-484
Classification Level Classification E-value
Superfamily Pectin lyase-like 2.65e-41
Family iota-carrageenase 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) gi|470178412|ref|YP_007564456.1|
Sequence length 701
Comment hypothetical protein YM304_22040 [Ilumatobacter coccineus YM16-304]
Sequence
MNVSPSAIRQLQTATPSRPASRLRLAGAAAAIGVACGSIGVAFVAAEAGAADIVHVSTFG
DDSASGSADSPVRTIEQGVRLAESGDTVQIAGGTYHESVQVYAKEVHLVAAPGADVVLDG
ARVVDGWSASPGGWSAPWSTDFERVGAPYTTSDVPEAGWPEQFFLDGAPLAEETSLAELD
PGEFFYDKSLGSVVIAENPNGRLVEGSDLSWGLYLNKADGSTVDGLTVRRYATQNRHMAA
VRAYADDLSITDTTVELNARIGLSAMGDRIELVDVRALDNGHLGVHGHRSTDLTMTDLQV
IGNNREHFDAKHSAGGIKVTETARLVVESTVSSDNNGPGIWTDLAVTDSRVVSSTAERNS
RSGIEIELSQDIVVFDNTLVDNGEAGIWVLESSGVDVWHNTALHNVRDIWVLDGDRADLT
GVVVKNNVLGGGADGAQALFNADDWTERRSAADMDVQIASNRYWLHPDSPTKLMSRWANW
PQPLSLSAAIDDHRAATGQGDGSDLVVSSSNPFARSSSDIRQADDAPAASPLPAAVADTV
GVTGAHPAGALSTLDHTATPRSNPDTTRNDDQSTVGDEPDSAGDGRTTSGTTPSTDDPAS
TPRTVPAPGSTPEGAENAEIARSSQTDIATPSTLPAAPVLDTVAPGQPTVVGSADDAATA
EAAGLRSADDAVAVDDARLARSGGWGAIHDHVLDALADLAA
Download sequence
Identical sequences M5A108
gi|470178412|ref|YP_007564456.1| WP_015441765.1.75388

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]