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Domain assignment for gi|478452846|ref|YP_007720594.1| from Chlamydia trachomatis L2b/Canada1

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|478452846|ref|YP_007720594.1|
Domain Number 1 Region: 96-174,287-389
Classification Level Classification E-value
Superfamily Sigma2 domain of RNA polymerase sigma factors 3.14e-61
Family Sigma2 domain of RNA polymerase sigma factors 0.000013
Further Details:      
 
Domain Number 2 Region: 450-551
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 6.35e-27
Family Sigma4 domain 0.00022
Further Details:      
 
Domain Number 3 Region: 392-465
Classification Level Classification E-value
Superfamily Sigma3 and sigma4 domains of RNA polymerase sigma factors 3.4e-17
Family Sigma3 domain 0.0026
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|478452846|ref|YP_007720594.1|
Sequence length 569
Comment RNA polymerase sigma factor [Chlamydia trachomatis L2b/Canada1]
Sequence
MDTLDSQAAEAAQEEEIQRKLEELVTLAKDQGFITYEEINEILPPSFDTPEQIDQVLIFL
AGMDVQVLNQADVERQKERKKEAKELEGLAKRSEGTPDDPVRMYLKEMGTVPLLTREEEV
EISKRIEKAQVQIERIILRFRYSTKEAVSIAQYLINGKERFDKIVSEKEVEDKTHFLNLL
PKLISLLKEEDAYLEERLLALKDPALSKPDQARLNDELEKCRIRTQAYLRCFHCRHNVTE
DFGEVVFKAYDSFLQLEQQINDLKARAERNKFAAAKLAAARRKLHKREVAAGRTLEEFKK
DVRMLQRWMDKSQEAKKEMVESNLRLVISIAKKYTNRGLSFLDLIQEGNMGLMKAVEKFE
YRRGYKFSTYATWWIRQAVTRAIADQARTIRIPVHMIETINKVLRGAKKLMMETGKEPTP
EELGEELGFTPDRVREIYKIAQHPISLQAEVGDGGESSFGDFLEDTAVESPAEATGYSML
KDKMKEVLKTLTDRERFVLIHRFGLLDGRPKTLEEVGSAFNVTRERIRQIEAKALRKMRH
PIRSKQLRAFLDLLEEEKIGSGKIKSYKN
Download sequence
Identical sequences A0A0E9D2P7
gi|478469991|ref|YP_007723271.1| gi|478472689|ref|YP_007733256.1| gi|478463685|ref|YP_007739497.1| gi|478464582|ref|YP_007741274.1| gi|478462786|ref|YP_007738607.1| gi|478451947|ref|YP_007715253.1| gi|478454652|ref|YP_007717031.1| gi|478456473|ref|YP_007726856.1| gi|478461880|ref|YP_007736830.1| gi|478470890|ref|YP_007729531.1| gi|478449251|ref|YP_007724174.1| gi|478465482|ref|YP_007742164.1| gi|478467281|ref|YP_007718813.1| gi|478471781|ref|YP_007740384.1| gi|478457366|ref|YP_007725959.1| gi|478452846|ref|YP_007720594.1| gi|478448348|ref|YP_007722382.1| gi|478468182|ref|YP_007743055.1| gi|478453760|ref|YP_007717922.1| gi|478459179|ref|YP_007732363.1| gi|478447456|ref|YP_007716144.1| gi|339626307|ref|YP_004717786.1| gi|478455558|ref|YP_007727748.1| gi|478460080|ref|YP_007734148.1| gi|478451047|ref|YP_007721489.1| gi|478474493|ref|YP_007730569.1| gi|478473590|ref|YP_007735038.1| gi|478450146|ref|YP_007719703.1|

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