SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|501679448|ref|YP_007999274.1| from Pseudomonas protegens CHA0

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|501679448|ref|YP_007999274.1|
Domain Number 1 Region: 340-584
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 3.24e-89
Family ABC transporter ATPase domain-like 0.00000106
Further Details:      
 
Domain Number 2 Region: 18-323
Classification Level Classification E-value
Superfamily ABC transporter transmembrane region 1.1e-70
Family ABC transporter transmembrane region 0.00011
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|501679448|ref|YP_007999274.1|
Sequence length 587
Comment lipid A export ATP-binding/permease protein MsbA [Pseudomonas protegens CHA0]
Sequence
MNSMLSSRHRRALHLASRFVAPYRWQALGALLALIVTAGITLSMGQGIRLLVDQGFMTQS
PHLLNQSIGLFLLLVLALAVGTFVRFYLVSWIGERCVADIRRQVFNHLIYLHPGFYENNR
SSEIQSRLTADTTLLQSVIGSSLSLFLRNALMVLGGIVLLFVTNPKLTSIVVIALPLVLA
PILIFGRRVRSLSRLSQDRIADVGSYVSETLGQIKTVQAYNHQPQDERRFAVTVEQAFDT
ARKRIVQRAWLITLVIVLVLGAVGVMLWVGGMDVIAGRISGGELAAFVFYSLIVGSAFGT
LSEVIGELQRAAGAAERIAELLRADNIIQPPADGLVSLPARVRGDLELDGLRFSYPSRPD
RFAIDGLSLSIRSGETLALVGPSGAGKSTLYDLLLRFYDPQQGRILLDGVALTQLDPLDL
RRCFALVSQSPALFYGSIEENIRYGNPEATLAQVQEAAKIAYAHEFIEQMPEGYQTHLGD
AGLGLSGGQRQRLAIARALLVDAPILLLDEATSALDAQSEHLIQQALPSLMKNRTTLVIA
HRLATVKNADRIAVMDQGRLAAVGTHQQLIASNPLYARLAALQFSDG
Download sequence
Identical sequences A0A2C9EJD5
gi|501679448|ref|YP_007999274.1|

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]