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Domain assignment for gi|501682178|ref|YP_008002004.1| from Pseudomonas protegens CHA0

Domain architecture


Domain assignment details

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Strong hits

Sequence:  gi|501682178|ref|YP_008002004.1|
Domain Number 1 Region: 129-195
Classification Level Classification E-value
Superfamily Nucleic acid-binding proteins 9e-22
Family Cold shock DNA-binding domain-like 0.00028
Further Details:      
 
Weak hits

Sequence:  gi|501682178|ref|YP_008002004.1|
Domain Number - Region: 37-122
Classification Level Classification E-value
Superfamily ABC transporter transmembrane region 0.0667
Family ABC transporter transmembrane region 0.031
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) gi|501682178|ref|YP_008002004.1|
Sequence length 201
Comment cold-shock domain family protein [Pseudomonas protegens CHA0]
Sequence
MLKIVHLLTGIAALLLSLIPSLRSDAVPYLQQPDALYLALFGLLNLILAPVIPYWNKGSR
HHLQNLVSALLVLVVVLQTLTLLAPMPVIGGQPAVLVSLLTALIAVVLHLAISFYKSSPS
ASATPSYDMSNRDTGTVKWFNTSKGFGFISRDSGDDIFVHFRAIRGEGHRVLVEGQRVEF
SVMNRDKGLQAEDVIAALPRR
Download sequence
Identical sequences A0A2C9ES64 A0A2K2WZC1 Q4K7D2
gi|70732095|ref|YP_261851.1| WP_011063024.1.100210 WP_011063024.1.11424 WP_011063024.1.12653 WP_011063024.1.14038 WP_011063024.1.1721 WP_011063024.1.18072 WP_011063024.1.21308 WP_011063024.1.27351 WP_011063024.1.39301 WP_011063024.1.41899 WP_011063024.1.42452 WP_011063024.1.42693 WP_011063024.1.462 WP_011063024.1.46426 WP_011063024.1.48506 WP_011063024.1.49818 WP_011063024.1.6225 WP_011063024.1.64508 WP_011063024.1.6649 WP_011063024.1.67749 WP_011063024.1.76749 WP_011063024.1.79484 WP_011063024.1.81001 WP_011063024.1.81277 WP_011063024.1.83211 WP_011063024.1.88821 220664.PFL_4770 gi|501682178|ref|YP_008002004.1|

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