SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for OB04G25990.1 from Oryza brachyantha 22

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  OB04G25990.1
Domain Number 1 Region: 91-198
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 3.53e-26
Family B3 DNA binding domain 0.002
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) OB04G25990.1
Sequence length 629
Comment pep:novel chromosome:Oryza_brachyantha.v1.4b:4:13911236:13913210:1 gene:OB04G25990 transcript:OB04G25990.1 description:"Uncharacterized protein "
Sequence
MSSVPPVGAAVYYFPQGHAEQASEAVDLSSARVPPLVPCRVVAVRFMADEETDEVFARIR
LAPLRPGDAVVDVGEAAAAGEGGRQQEEDRPQPASVPKTLTQSDANNGGGFSVPRFCAET
IFPELNYRDEPPVQLIHAKDVHGEQWTFRHIYRGTPRRHLLTTGWSPFVNKKQLLAGDCI
VFMRDEGRNIHVGIRRAKRGFCGIGGDDEGLSSLPAWDQFRGLVRGNATAGGESSPTKGK
VPPENVLTAATLATSGQPFEVLYYPRASTPEFCVRASAVRTALSVQWCPGMRFKMAFETE
DSSRISWFMGTIAGVQAADPIRWPKSPWRLLQVTWDEPELLQNVKRVCPWLVELVSSMPN
LHLPSFSSPRKKPRIPPYAEFPPDAQLFNPAFPPNLMAHGHADHHHHLHHGFPFLPFPDG
SAQPAGIQGARHAQFASSFPDLYIGNLQPNLMLYSGIRLPPADQAAPRPPRIISTDLTIG
SQLAPDEPTTSPSSSARKIDNAKPTGFLLFGQAILTEQQIKNGNSGGRASPGATRKRSLN
WDAEKAPNGSEGSDSAGFSEGSPTTTKGQPPPHQHAVVEVAVFWRQQKPRIRVRAGARPV
QGVRRVGSRRPEPRSHGSELVRGAVRPTV
Download sequence
Identical sequences J3LZM4
OB04G25990.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]