SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for HGL_H00000260956-2 from Heterocephalus glaber v1.7-2

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  HGL_H00000260956-2
Domain Number 1 Region: 11-100
Classification Level Classification E-value
Superfamily "Winged helix" DNA-binding domain 3.99e-28
Family La domain 0.00000638
Further Details:      
 
Domain Number 2 Region: 102-194
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 9.09e-16
Family Canonical RBD 0.00000932
Further Details:      
 
Domain Number 3 Region: 236-322
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 0.000000000000923
Family Canonical RBD 0.0000121
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) HGL_H00000260956-2
Sequence length 336
Comment SSB (Homo_sapiens) Sjogren syndrome antigen B (autoantigen La)
Sequence
MAENGDNEKLAALEAKICHQIEYYFGDFNLPWDKFLKEQIKLDEGWVPLEIMIKFNRLNR
LTTDFNVIVEALSKSKAELMEISEDKTKIRRSPNKPLPEVTHEYKNDVKNRSVYIKGFPK
VATLDDIKEWLEDKGQVLNIQMKRTLHKAFKGSIFAVFDNIESAKKFVETLGQKYKDTDL
LILFKEDYFAKKNEERKQNKGEAKLRAKQEQEEKQKLAEDAEMKSLEEKIGCWLKFSGDL
DDQTCREDLHVLFSNHGEIKWIAFVRGAKEGEILFKDKAKEALDKAKDANNGSLQLRNKE
VTWEVLEGGVEKEALKKNRRRSTRISKQMEIKRSQI
Download sequence
Identical sequences G5AW20
HGL_H00000260956-2

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]