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Domain assignment for HGL_H00000313007-1 from Heterocephalus glaber v1.7-2

Domain architecture


Domain assignment details

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Strong hits

Sequence:  HGL_H00000313007-1
Domain Number 1 Region: 574-706
Classification Level Classification E-value
Superfamily PABC (PABP) domain 2.09e-52
Family PABC (PABP) domain 0.0000002
Further Details:      
 
Domain Number 2 Region: 280-447
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 1.09e-41
Family Canonical RBD 0.0019
Further Details:      
 
Domain Number 3 Region: 159-273
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 2.21e-30
Family Canonical RBD 0.00000849
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

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Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score

Protein sequence

External link(s) HGL_H00000313007-1
Sequence length 709
Comment PABPC1 (Homo_sapiens) poly(A) binding protein, cytoplasmic 1
Sequence
MYLVYRKVTSRTSGTFLVLVPPRKVIARLRGWAWCQDLPLKVPEAPCQVPLSFFPLFTGG
EPEEKPVATYKRRPAAPAGPTVLAPNRQAVLKASFLNTLAPEPHGGLAGLRHRLTSPWAP
PKDKAVPLGDSRALGTLPLLARPSADPSSPWESRAERALDTMNFDVIKGKPVRIMWSQRD
PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEA
AERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDL
FGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKV
ERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKNSEEAT
KAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSG
YFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMR
PASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHLNTQ
PQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLE
IDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQKAVNSATGVPTV
Download sequence
Identical sequences G5AP00
HGL_H00000313007-1

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