SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for cassava4.1_001769m|PACid:17972845 from Manihot esculenta v147

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  cassava4.1_001769m|PACid:17972845
Domain Number 1 Region: 111-256
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 2.09e-49
Family B3 DNA binding domain 0.0065
Further Details:      
 
Domain Number 2 Region: 710-790
Classification Level Classification E-value
Superfamily CAD & PB1 domains 0.000000255
Family PB1 domain 0.027
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) cassava4.1_001769m|PACid:17972845
Sequence length 821
Sequence
MKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPTVGSRVVYFPQGHSEQVAATTNKE
VDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGMPS
KQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFR
HIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRATRPQTVMPSSVL
SSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYVKAVFHTRVSVGMRFRM
LFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLT
TFPMYPSLFPLRLRRPWHPGPSSLLDNRDEAGNGLMWLRGGTGEQGLHSLNFQAVNMFPW
TQQRLDPALLGNDQNQWYQAMLASGLGDPLRQQFMQFQQPFQYLQQSSNHYPLLQLQQQQ
QAIQQSTSHNILQAQNQISTESLPRHLLQQQLNNQPDDQAQQQQHNYHDALQIQGEQLKR
QQSNLPSPSFSKTDFMDSSTKFSASTTPMQNMLGSLCAEGSGNLLDFTRTGQSPLTTLTE
QLPQQSWVPKYAHSQVNAFTNAVSLPRPYPEKDHAVEPENCSLDAQNATNFGVNIDSSGL
LLPTTLPRYATSTVDSDVSSMPLGDPGFQSSMYGGVQDSSELLPSAGQVDPPTPSRTFVK
VYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLENPHRSGWQLVFVDRENDVLLLGD
DPWEAFVNNVWYIKILSPGDVQKMGEQGLESFSPNVGQRIE
Download sequence
Identical sequences cassava4.1_001769m|PACid:17972845

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]