SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for cassava4.1_023688m|PACid:17988714 from Manihot esculenta v147

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  cassava4.1_023688m|PACid:17988714
Domain Number 1 Region: 253-362
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 4.71e-23
Family B3 DNA binding domain 0.0017
Further Details:      
 
Domain Number 2 Region: 50-135
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 1.47e-19
Family B3 DNA binding domain 0.003
Further Details:      
 
Weak hits

Sequence:  cassava4.1_023688m|PACid:17988714
Domain Number - Region: 2-37
Classification Level Classification E-value
Superfamily DNA-binding pseudobarrel domain 0.00167
Family B3 DNA binding domain 0.017
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Biological Process IC (bits) H-Score
Cellular Component IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) cassava4.1_023688m|PACid:17988714
Sequence length 415
Sequence
GIPRKFAQKFGEYLSSPVLIKVPGGRIWQVELTKFNGEIKRSLESMLFAYFKSFCQGVPK
RFARKYGGFLSNPVVLKVPGGRIWQVEVTKFDGEVWFQNGWQGFLEYYSLVHGSFLVFEY
DKSSCHFNVTIFDKSASEIEYPVSVTNGDDKEINDLQEEIQEPKIIEETENDSYVETLDD
SVLGRKRKEKALLSSLQPQKMMKVENPTGNTSLHFPGKQVEGKKQTSDCIAVRKKPLTTQ
EKTKAVHRASVNFKSDNPFFLIVMQPSYVHPGEKMSIPASFAMKYFPLKHTSDVNLNGLD
GRTWSVKFYFNKASNGQPMAKITRGWRVFAEDNCLEVGDVCAFELIMIQGAKATFKVTIF
RNKKGDKMISKEEEESNSPGAIAADKGFTSVHPFFKAVISSSYLDTMDFLVLDAD
Download sequence
Identical sequences cassava4.1_023688m|PACid:17988714

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]