SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for OBART05G03830.2 from Oryza barthii 22

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  OBART05G03830.2
Domain Number 1 Region: 196-535
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 5.97e-104
Family Motor proteins 0.00000003
Further Details:      
 
Domain Number 2 Region: 889-981,1045-1110
Classification Level Classification E-value
Superfamily RNA-binding domain, RBD 6.79e-27
Family Canonical RBD 0.000056
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) OBART05G03830.2
Sequence length 1122
Comment pep:novel chromosome:ABRL00000000:5:2808971:2819814:1 gene:OBART05G03830 transcript:OBART05G03830.2 description:""
Sequence
MGDSGDAVMARWLQSAGLQHLAASSTSSSSVSTAGGGVDPRGGGGVGVGALGGGAGGGSL
LPSLLMQGYGPQSIEEKQRLYMLLRSLNFNGETAPPSISEPYTPTAQSFGGGNSLEGFYS
PELRGELGAGLLDLHAMDDTELLSEDVASEPFEPSPFIPKEMDEDDDDMLPGSQPGPSDN
YNAVANEKESTARENNVAKIKVVVRKRPLNRKEVSRKEEDIITVHDSSSLTVYEPKLKVD
LTAYVEKHEFCFDAVLDEQVSNDEVYRETVEPIIPIIFQRTKATCFAYGQTGSGKTYTMQ
PLPLRAAQDMVRLLHQPVYRNQNFKLWLSYFEIYGGKLFDLLSDRRQLLMREDGKKQVCI
VGLQEFEVSDVQIVKEYIERGNAARSTGSTGANEESSRSHAILQLAIKKHIIVTDTRRQR
DRDANESKNTKAVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDN
DQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKGSN
TRKEQPTGPTIPSSKDSSSAPSYPMPIETEEIANQIQEKRPVETSRKAAENFTSNSSMEP
DRNPVSMIPSYSNRGKEENGSSGLNDRERVDLNSSRISYNSKPQSVQSSANLQEEEKVTK
VSPPRRKAYRDDKPERQSNYAKKDSGPETSRPGYKVQQAKQLQQQQRPTSASASQNSSRQ
SEKESSCDDVEIDAILEEEEALIAAHRKEIESTMEIVREEMNLLAEVDQPGSLIDNYVTQ
LSFLLSRKAAGLVSLQARLARFQHRLKEQEILSHAWLGLFCQFFHCMMRHVTTVFADMDG
PNTKGEVERGEREREGRESSRARAARREEMSGEVAAAVGGGAPEENGAPPNVTIYINNLN
EKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASATEALKSMQDFPFH
NKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDVSQVGLGVNAYPG
VYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLFCQYPGFKEVRMV
EAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK
Download sequence
Identical sequences A0A0D3G3E4 I1PSK8
OBART05G03830.2 ORGLA05G0035600.1

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]