SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for OBART05G08410.4 from Oryza barthii 22

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  OBART05G08410.4
Domain Number 1 Region: 275-358,385-542
Classification Level Classification E-value
Superfamily P-loop containing nucleoside triphosphate hydrolases 1.44e-36
Family Extended AAA-ATPase domain 0.075
Further Details:      
 
Domain Number 2 Region: 1214-1468
Classification Level Classification E-value
Superfamily WD40 repeat-like 1.16e-32
Family WD40-repeat 0.0036
Further Details:      
 
Domain Number 3 Region: 669-977
Classification Level Classification E-value
Superfamily RNI-like 3.22e-18
Family 28-residue LRR 0.05
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Molecular Function IC (bits) H-Score
Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score

Protein sequence

External link(s) OBART05G08410.4
Sequence length 1489
Comment pep:novel chromosome:ABRL00000000:5:7278399:7292649:-1 gene:OBART05G08410 transcript:OBART05G08410.4 description:""
Sequence
MGFYPDASPPVVAPCRHKVATFGPLFSLTLSLSNPSAWMGLECAKGNNTGEQRDYRRKPS
PSRAAMKSTNPFQGLDLAGERQGQQSCASLLLQAKRRRRIWGGRAFLAVYDRLVPDPQFA
SMELATGAMRSLLPKLLQLLEKEYGLQTGVREKIKSLSRELDVVHAVLRKIGDVPSEQVD
ELVKLWARDVREASYEMEDIVDTFLVHDDGPDPTDPHMLLRLRKKLGKLFKKSKARRKIS
NLIQDINKKFEQVKARHVKYTVDSVVLKSLAATTIDPRLQNLYKRATELVGIDGPRDDLI
NKLSLGGDVDVSDKKMKVISVVGFGGLGKTTLAKAVYDHFKPHFKCRASVPVDQNPDMNK
AFDDQVEPHFKCGAFVPVGRNPDMKKVFRDILIDLDKEKYTNPNMMVLDEKQLMDELKEF
VKEKRCFIVIDDIWDKESWKLIRCALQESDCGSRLVITTRISEVATHAGEAYKIQPLSRD
NSEKLLYARIVDGEWKYFDNPSAEACEKILKKCGGVPLAIITIASLLASKPGEDWSEVYN
SIGFGHEDNDDVDHVIEKNSLIWKWIAEGFIHEELAAGLGLFELGERCFNELINRSMIQP
VETKHEGYVDGCCVHDMVLDMIHSLSSEENFVTVLNGDERQKLPGSIARRLALQRVLVHK
DGQLANITLKNVRSLIASQCFGSLCLHTLVLRVLDVINCAESETPNVLEDRDKTMPSHLG
SLLHLRYLGLVDTYITKLPREVSRVSADTGFKGKSHKGAARGVGLLTQLVCLRADWEIRV
KIGLIGKLTSLQELWIEPAAAVYDDDAASVDDDDDASAVDDTTKSTMKFVNELGLLRELR
VLRTYFEDLNESMERALLESLSNLHNIRDLHIEGPPLVTSSARSVSCLHLRYLCLNCFVF
SGLPAWIKSSLAPNLSCLDVVVLIVKEQDMETLARLPELRCLVLRSHETELVSIKIHTED
VGYFRKLRILRILGTSIWFDLHGSKCNITDNRSLASIIMPSLEFLEFAVHMRFLKDATQL
GFDKLLSFEKLGRSSLQKVTIVLKCGDARLSEVEEVAAALMNSAAVHPKHPTVQTKWQDE
QAVLSPYQEAYMHVSRTPELVNEAWKANIVSSGRIRALRMPVTEASSSKVICLLYRKSGK
GILALSSNAVHKLWKWESNDKSCWHAQFCLVVFLKPSLLFSTTSVPPQVWQPESDILMND
TANGNPEEAAACSLLSKSDCYLISASGGKVSLFNMFNFKTMTTFIAPPPSATFLAFHPHD
NNIIAIGTDDSSILLYNIRVDEVKWVLKGHQKKITGLVFSLSMNVLVSSGADSQLCVWSM
EDWAKKKSRYIQPPSNHSGALVGDIMVQFHYDQKRLLVVHESQLAIYDVELECLCSWFPS
DPLPAPVSSAVYSSDGLLIYAGFCDGAIGIFQVESLMLQCRIAPSAYIPSSVSSGGEIVY
PMVVAAHPWKPNQFAVGMSDGAVHVLEPLDTPDDIISNSIQQGRFGDSG
Download sequence
Identical sequences A0A0D3G4W9
OBART05G08410.4

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]