SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain assignment for gi|385804138|ref|YP_005840538.1| from Haloquadratum walsbyi C23

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|385804138|ref|YP_005840538.1|
Domain Number 1 Region: 7-164
Classification Level Classification E-value
Superfamily Ribosomal protein S5 domain 2-like 1.14e-17
Family GHMP Kinase, N-terminal domain 0.0061
Further Details:      
 
Weak hits

Sequence:  gi|385804138|ref|YP_005840538.1|
Domain Number - Region: 199-261
Classification Level Classification E-value
Superfamily GHMP Kinase, C-terminal domain 0.0223
Family Homoserine kinase 0.042
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|385804138|ref|YP_005840538.1|
Sequence length 305
Comment shikimate kinase, archaeal-type [Haloquadratum walsbyi C23]
Sequence
MHGRAVALGAGTVLNALATGIGAAFALDVETTATVDITPEETLDSTRVNGTIAGVENGDT
RLIERCVELAIETYGPGDMQYIAHIQTESDIPMAAGLKSSSAAANASILATADAFDITPE
PISACRLGVRAARDVGVTVTGAFDDASASMLGGVTVTNNNEDKLLAHDTVEWDVVVWTPP
ERAYSADADAERCANIAPMAELVEDLALTNQYTEAMTVNGLAFSAALGFDPAPAVEVMPY
ASGVSLSGTGPSVVAVADRNSESKGESDEVDLAVVTRRWRSRGGTVWKTTTRATREESST
RPDET
Download sequence
Identical sequences G0LJG8 Q18GM7
gi|385804138|ref|YP_005840538.1| gi|110668663|ref|YP_658474.1| WP_011571984.1.31310 WP_011571984.1.96088 362976.HQ2762A

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]