SUPERFAMILY 1.75 HMM library and genome assignments server

SUPERFAMILY 2 can be accessed from supfam.org. Please contact us if you experience any problems.

Domain assignment for gi|385804752|ref|YP_005841152.1| from Haloquadratum walsbyi C23

Domain architecture


Domain assignment details

(
show help)
Strong hits

Sequence:  gi|385804752|ref|YP_005841152.1|
Domain Number 1 Region: 72-436
Classification Level Classification E-value
Superfamily Periplasmic binding protein-like I 6.85e-60
Family L-arabinose binding protein-like 0.00045
Further Details:      
 

Gene Ontology term assignment details

The top 10 most specific Gene Ontology terms for each namespace assigned to this domain architecture as determined by dcGO Predictor

(show help)

Cellular Component IC (bits) H-Score
Biological Process IC (bits) H-Score
Molecular Function IC (bits) H-Score

Protein sequence

External link(s) gi|385804752|ref|YP_005841152.1|
Sequence length 448
Comment ABC-type transport system periplasmic substrate-binding protein (probable substrate branched-chain amino acids) [Haloquadratum walsbyi C23]
Sequence
MPSEGADKKQRIANRRTYLKGLGAAGTVLLAGCSGSGGGSGGDDAASETESGSGDGDSEA
TDGGTMGGDGGTLTIGALQPFTGGFDWIASNTKPAYNLAFSEIEEAGILGGMSLEANEQD
SATDPQQALSGLQTLDSAGVPAVIGPSSSVMPNLIQPIQNNEVPVNTVMAGTIQLDDTGG
EWLWRSVPSDAVGGAAAGKYAYEDLNHEKMALAYKNDKGSQSFSASVGEAFKSLGGSIVG
EVPLPINASDYRSEIQELQQMDVDFVQMTAATEVSGLFMKNYDELGAKEDFNLALGNDVL
TQGFIETTGADVMEGMIGQAPAAGPANDQFAASFEEMHGEPPGTFSAAAYDAANLFALAF
QSAGEVSRSVIPEHLPKIATPPGTEVTTFAEGKEALDNGDEINYTGASNPQNFDENGNVV
GPFNVVQAQDGEWNPVTTYEASVLQDVY
Download sequence
Identical sequences G0LF02
gi|385804752|ref|YP_005841152.1| WP_014556912.1.96088

Jump to [ Top of page · Domain architecture · Domain assignment details · Most Informative Gene Ontologies ]